Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC016909.1-201ENST00000415916 166 ntBASIC2.19□□□□□ -2.06
SOX2P48431 AL121890.1-201ENST00000435457 205 ntBASIC2.19□□□□□ -2.06
SOX2P48431 AC025750.2-201ENST00000442609 450 ntBASIC2.19□□□□□ -2.06
SOX2P48431 RPL23AP7-203ENST00000449021 469 ntBASIC2.19□□□□□ -2.06
SOX2P48431 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.19□□□□□ -2.06
SOX2P48431 Y_RNA.679-201ENST00000516416 91 ntBASIC2.19□□□□□ -2.06
SOX2P48431 AC027419.1-201ENST00000522976 328 ntBASIC2.19□□□□□ -2.06
SOX2P48431 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.19□□□□□ -2.06
SOX2P48431 MIR3126-201ENST00000577443 74 ntBASIC2.19□□□□□ -2.06
SOX2P48431 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.19□□□□□ -2.06
SOX2P48431 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SOX2P48431 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.19□□□□□ -2.06
SOX2P48431 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.19□□□□□ -2.06
SOX2P48431 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
SOX2P48431 AL159152.1-201ENST00000635019 2587 ntBASIC2.18□□□□□ -2.06
SOX2P48431 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
SOX2P48431 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.18□□□□□ -2.06
SOX2P48431 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SOX2P48431 SNORA27.1-201ENST00000362604 124 ntBASIC2.18□□□□□ -2.06
SOX2P48431 Y_RNA.269-201ENST00000364685 89 ntBASIC2.18□□□□□ -2.06
SOX2P48431 RNU6-407P-201ENST00000365280 104 ntBASIC2.18□□□□□ -2.06
SOX2P48431 RNU1-52P-201ENST00000384190 164 ntBASIC2.18□□□□□ -2.06
SOX2P48431 RNU6-1289P-201ENST00000384431 106 ntBASIC2.18□□□□□ -2.06
SOX2P48431 RNU6-160P-201ENST00000384591 107 ntBASIC2.18□□□□□ -2.06
SOX2P48431 NDUFB4P4-201ENST00000404822 243 ntBASIC2.18□□□□□ -2.06
SOX2P48431 MIR1253-201ENST00000408273 105 ntBASIC2.18□□□□□ -2.06
SOX2P48431 MIR1262-201ENST00000408276 93 ntBASIC2.18□□□□□ -2.06
SOX2P48431 RN7SKP284-201ENST00000411002 343 ntBASIC2.18□□□□□ -2.06
SOX2P48431 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.18□□□□□ -2.06
SOX2P48431 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.18□□□□□ -2.06
SOX2P48431 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.18□□□□□ -2.06
SOX2P48431 AC009127.3-201ENST00000570531 403 ntBASIC2.18□□□□□ -2.06
SOX2P48431 MIR4643-201ENST00000577473 78 ntBASIC2.18□□□□□ -2.06
SOX2P48431 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.18□□□□□ -2.06
SOX2P48431 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
SOX2P48431 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SOX2P48431 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.82-201ENST00000363000 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.92-201ENST00000363043 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.117-201ENST00000363294 101 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.217-201ENST00000364214 105 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.235-201ENST00000364412 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.306-201ENST00000365015 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.312-201ENST00000365089 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.322-201ENST00000365151 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 MIR144-201ENST00000384886 86 ntBASIC2.17□□□□□ -2.06
SOX2P48431 RNU6-855P-201ENST00000410395 104 ntBASIC2.17□□□□□ -2.06
SOX2P48431 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.650-201ENST00000459002 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.641-201ENST00000459414 105 ntBASIC2.17□□□□□ -2.06
SOX2P48431 AP001486.1-201ENST00000463339 476 ntBASIC2.17□□□□□ -2.06
SOX2P48431 RNU6-1146P-201ENST00000516282 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.777-201ENST00000516982 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.771-201ENST00000598668 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 Y_RNA.789-201ENST00000622480 102 ntBASIC2.17□□□□□ -2.06
SOX2P48431 SCARNA15.3-201ENST00000626315 122 ntBASIC2.17□□□□□ -2.06
SOX2P48431 SCARNA4.1-201ENST00000628597 123 ntBASIC2.17□□□□□ -2.06
SOX2P48431 ZNF271P-202ENST00000465539 1970 ntBASIC2.17□□□□□ -2.06
SOX2P48431 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
SOX2P48431 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
SOX2P48431 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.17□□□□□ -2.06
SOX2P48431 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.16□□□□□ -2.06
SOX2P48431 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
SOX2P48431 Y_RNA.122-201ENST00000363331 96 ntBASIC2.16□□□□□ -2.06
SOX2P48431 Y_RNA.124-201ENST00000363339 93 ntBASIC2.16□□□□□ -2.06
SOX2P48431 RNY1-201ENST00000364228 113 ntBASIC2.16□□□□□ -2.06
SOX2P48431 Y_RNA.341-201ENST00000365341 102 ntBASIC2.16□□□□□ -2.06
SOX2P48431 RNU1-148P-201ENST00000384472 162 ntBASIC2.16□□□□□ -2.06
SOX2P48431 MIR128-1-201ENST00000384921 82 ntBASIC2.16□□□□□ -2.06
SOX2P48431 MIR9-1-201ENST00000385198 89 ntBASIC2.16□□□□□ -2.06
SOX2P48431 MIR524-201ENST00000385242 87 ntBASIC2.16□□□□□ -2.06
SOX2P48431 AC060773.1-201ENST00000421698 310 ntBASIC2.16□□□□□ -2.06
SOX2P48431 AC010154.1-201ENST00000425857 269 ntBASIC2.16□□□□□ -2.06
SOX2P48431 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.16□□□□□ -2.06
SOX2P48431 AL513328.1-201ENST00000446460 224 ntBASIC2.16□□□□□ -2.06
SOX2P48431 RNU1-131P-201ENST00000458943 161 ntBASIC2.16□□□□□ -2.06
SOX2P48431 RPS26P55-201ENST00000471178 356 ntBASIC2.16□□□□□ -2.06
SOX2P48431 RPS27P22-201ENST00000478056 241 ntBASIC2.16□□□□□ -2.06
SOX2P48431 AC096725.1-201ENST00000514266 313 ntBASIC2.16□□□□□ -2.06
SOX2P48431 RNA5SP20-201ENST00000515976 84 ntBASIC2.16□□□□□ -2.06
SOX2P48431 RNA5SP402-201ENST00000517148 110 ntBASIC2.16□□□□□ -2.06
SOX2P48431 AC009779.6-201ENST00000603972 165 ntBASIC2.16□□□□□ -2.06
SOX2P48431 AC093732.2-201ENST00000607950 274 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.15-201ENST00000611544 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.16-201ENST00000613119 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.12-201ENST00000613778 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.20-201ENST00000613956 192 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.9-201ENST00000615427 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.11-201ENST00000616345 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.2-201ENST00000616535 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.3-201ENST00000617785 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.19-201ENST00000618602 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 RNU2-1-201ENST00000618664 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.6-201ENST00000619225 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.5-201ENST00000619465 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 U2.10-201ENST00000620268 191 ntBASIC2.16□□□□□ -2.06
SOX2P48431 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.16□□□□□ -2.06
SOX2P48431 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
SOX2P48431 AP006437.1-201ENST00000641440 3685 ntBASIC2.15□□□□□ -2.06
SOX2P48431 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms