Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU1-139P-201ENST00000391307 165 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AL034345.1-201ENST00000407768 123 ntBASIC0.98□□□□□ -2.25
RFX3P48380 RNU6-1186P-201ENST00000410429 97 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.98□□□□□ -2.25
RFX3P48380 AC245047.3-201ENST00000429428 127 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AC005002.2-201ENST00000438228 269 ntBASIC0.98□□□□□ -2.25
RFX3P48380 MTND4P18-201ENST00000447010 465 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.98□□□□□ -2.25
RFX3P48380 RPL39P38-201ENST00000467018 153 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AP000870.1-201ENST00000472927 406 ntBASIC0.98□□□□□ -2.25
RFX3P48380 RPS23P4-201ENST00000487908 423 ntBASIC0.98□□□□□ -2.25
RFX3P48380 RNU6-1114P-201ENST00000516022 107 ntBASIC0.98□□□□□ -2.25
RFX3P48380 SNORD116-28-201ENST00000516123 91 ntBASIC0.98□□□□□ -2.25
RFX3P48380 RNU6-720P-201ENST00000516363 108 ntBASIC0.98□□□□□ -2.25
RFX3P48380 RNU7-128P-201ENST00000517247 62 ntBASIC0.98□□□□□ -2.25
RFX3P48380 CYCSP23-201ENST00000519781 313 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.98□□□□□ -2.25
RFX3P48380 UBL5P4-201ENST00000562584 236 ntBASIC0.98□□□□□ -2.25
RFX3P48380 MIR3684-201ENST00000579779 74 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AL390123.1-201ENST00000603216 237 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AC136443.5-201ENST00000603741 370 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AL022345.2-201ENST00000606307 135 ntBASIC0.98□□□□□ -2.25
RFX3P48380 SNORD114-21-201ENST00000606412 72 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AC103810.9-201ENST00000606688 112 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AC100812.1-201ENST00000607622 580 ntBASIC0.98□□□□□ -2.25
RFX3P48380 AL513423.1-201ENST00000621695 132 ntBASIC0.98□□□□□ -2.25
RFX3P48380 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.98□□□□□ -2.25
RFX3P48380 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
RFX3P48380 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
RFX3P48380 Y_RNA.122-201ENST00000363331 96 ntBASIC0.97□□□□□ -2.25
RFX3P48380 RNU6-727P-201ENST00000363592 107 ntBASIC0.97□□□□□ -2.25
RFX3P48380 SNORA22-201ENST00000383907 134 ntBASIC0.97□□□□□ -2.25
RFX3P48380 Y_RNA.533-201ENST00000384596 114 ntBASIC0.97□□□□□ -2.25
RFX3P48380 SNORA22C-201ENST00000384614 134 ntBASIC0.97□□□□□ -2.25
RFX3P48380 RNU6-440P-201ENST00000390882 105 ntBASIC0.97□□□□□ -2.25
RFX3P48380 AL139396.1-201ENST00000421137 167 ntBASIC0.97□□□□□ -2.25
RFX3P48380 MTND1P17-201ENST00000448961 204 ntBASIC0.97□□□□□ -2.25
RFX3P48380 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.97□□□□□ -2.25
RFX3P48380 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.97□□□□□ -2.25
RFX3P48380 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.97□□□□□ -2.25
RFX3P48380 Y_RNA.683-201ENST00000516508 93 ntBASIC0.97□□□□□ -2.25
RFX3P48380 RNU6-566P-201ENST00000516790 107 ntBASIC0.97□□□□□ -2.25
RFX3P48380 Y_RNA.706-201ENST00000516933 99 ntBASIC0.97□□□□□ -2.25
RFX3P48380 AL121579.1-201ENST00000555129 305 ntBASIC0.97□□□□□ -2.25
RFX3P48380 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.97□□□□□ -2.25
RFX3P48380 AC012557.2-201ENST00000605919 418 ntBASIC0.97□□□□□ -2.25
RFX3P48380 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
RFX3P48380 RNU1-124P-201ENST00000363861 145 ntBASIC0.96□□□□□ -2.26
RFX3P48380 Y_RNA.355-201ENST00000365462 98 ntBASIC0.96□□□□□ -2.26
RFX3P48380 Y_RNA.405-201ENST00000383979 100 ntBASIC0.96□□□□□ -2.26
RFX3P48380 Y_RNA.451-201ENST00000384200 100 ntBASIC0.96□□□□□ -2.26
RFX3P48380 Y_RNA.524-201ENST00000384564 100 ntBASIC0.96□□□□□ -2.26
RFX3P48380 RNU6-306P-201ENST00000384617 107 ntBASIC0.96□□□□□ -2.26
RFX3P48380 Y_RNA.554-201ENST00000384672 102 ntBASIC0.96□□□□□ -2.26
RFX3P48380 Y_RNA.561-201ENST00000384694 100 ntBASIC0.96□□□□□ -2.26
RFX3P48380 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.96□□□□□ -2.26
RFX3P48380 SNORD5.1-201ENST00000458800 75 ntBASIC0.96□□□□□ -2.26
RFX3P48380 SNORD65B-201ENST00000459126 73 ntBASIC0.96□□□□□ -2.26
RFX3P48380 snoU13.18-201ENST00000459483 104 ntBASIC0.96□□□□□ -2.26
RFX3P48380 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.96□□□□□ -2.26
RFX3P48380 AC010598.1-201ENST00000510378 103 ntBASIC0.96□□□□□ -2.26
RFX3P48380 FRG2DP-202ENST00000566967 323 ntBASIC0.96□□□□□ -2.26
RFX3P48380 HSPE1P19-201ENST00000603327 295 ntBASIC0.96□□□□□ -2.26
RFX3P48380 MIR3662-201ENST00000637030 95 ntBASIC0.96□□□□□ -2.26
RFX3P48380 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.95□□□□□ -2.26
RFX3P48380 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.95□□□□□ -2.26
RFX3P48380 SNORD114-27-201ENST00000363766 70 ntBASIC0.95□□□□□ -2.26
RFX3P48380 RNU4-12P-201ENST00000365233 139 ntBASIC0.95□□□□□ -2.26
RFX3P48380 RNU6-831P-201ENST00000384548 107 ntBASIC0.95□□□□□ -2.26
RFX3P48380 MIR562-201ENST00000384894 95 ntBASIC0.95□□□□□ -2.26
RFX3P48380 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
RFX3P48380 SNORA12.1-201ENST00000390873 148 ntBASIC0.95□□□□□ -2.26
RFX3P48380 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
RFX3P48380 USP9YP16-201ENST00000430287 407 ntBASIC0.95□□□□□ -2.26
RFX3P48380 MTND3P23-201ENST00000431980 347 ntBASIC0.95□□□□□ -2.26
RFX3P48380 MRPS10P1-201ENST00000448483 130 ntBASIC0.95□□□□□ -2.26
RFX3P48380 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.95□□□□□ -2.26
RFX3P48380 USP9YP23-201ENST00000455085 407 ntBASIC0.95□□□□□ -2.26
RFX3P48380 RPS29P25-201ENST00000481709 171 ntBASIC0.95□□□□□ -2.26
RFX3P48380 RNU6-1088P-201ENST00000516850 104 ntBASIC0.95□□□□□ -2.26
RFX3P48380 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.95□□□□□ -2.26
RFX3P48380 AC090617.3-201ENST00000573670 475 ntBASIC0.95□□□□□ -2.26
RFX3P48380 MIR5695-201ENST00000579717 85 ntBASIC0.95□□□□□ -2.26
RFX3P48380 MIR4438-201ENST00000585271 93 ntBASIC0.95□□□□□ -2.26
RFX3P48380 SNORA28-201ENST00000606769 126 ntBASIC0.95□□□□□ -2.26
RFX3P48380 AC093913.1-201ENST00000614178 329 ntBASIC0.95□□□□□ -2.26
RFX3P48380 AC073349.3-201ENST00000617616 186 ntBASIC0.95□□□□□ -2.26
RFX3P48380 AC100810.6-201ENST00000638068 285 ntBASIC0.95□□□□□ -2.26
RFX3P48380 AC018630.2-201ENST00000534866 2403 ntBASIC0.95□□□□□ -2.26
RFX3P48380 Y_RNA.295-201ENST00000364918 102 ntBASIC0.94□□□□□ -2.26
RFX3P48380 RNU6-281P-201ENST00000384212 103 ntBASIC0.94□□□□□ -2.26
RFX3P48380 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.94□□□□□ -2.26
RFX3P48380 AC016907.1-201ENST00000419483 435 ntBASIC0.94□□□□□ -2.26
RFX3P48380 AL445305.1-201ENST00000432577 575 ntBASIC0.94□□□□□ -2.26
RFX3P48380 AC092991.1-201ENST00000477176 376 ntBASIC0.94□□□□□ -2.26
RFX3P48380 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.94□□□□□ -2.26
RFX3P48380 AC046134.1-201ENST00000514454 666 ntBASIC0.94□□□□□ -2.26
RFX3P48380 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.94□□□□□ -2.26
RFX3P48380 AL133216.2-202ENST00000634512 349 ntBASIC0.94□□□□□ -2.26
RFX3P48380 Y_RNA.301-201ENST00000364990 103 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 144.6 ms