Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.557-201ENST00000384680 107 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 MIR559-201ENST00000385188 96 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 Y_RNA.579-201ENST00000390939 94 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 Y_RNA.605-201ENST00000410577 105 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 RNU6-1001P-201ENST00000411265 100 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 AC004965.1-201ENST00000413033 213 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 AF228730.4-201ENST00000421457 183 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 RPL31P63-201ENST00000422565 375 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 AC091179.3-201ENST00000474761 144 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.56□□□□□ -2.16
TNFRSF4P43489 RNU7-4P-201ENST00000516961 62 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 RNU6-699P-201ENST00000517081 110 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 SNORA31.24-201ENST00000517232 57 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
TNFRSF4P43489 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.56□□□□□ -2.16
TNFRSF4P43489 AC010615.1-201ENST00000594254 1764 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 ZNF209P-201ENST00000593450 2304 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 RNU1-62P-201ENST00000362599 164 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 RNU6-414P-201ENST00000363705 104 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 Y_RNA.415-201ENST00000384012 112 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 Y_RNA.419-201ENST00000384041 102 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 Y_RNA.509-201ENST00000384506 99 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 MIR628-201ENST00000385229 95 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 MIR934-201ENST00000401241 83 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.55□□□□□ -2.16
TNFRSF4P43489 CST2P1-201ENST00000425770 87 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 AC099799.1-201ENST00000439809 192 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 UBE2V1P7-201ENST00000446395 340 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 U8.22-201ENST00000459141 133 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 AC027575.1-201ENST00000481064 460 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 RPL36AP21-201ENST00000490372 323 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 Y_RNA.683-201ENST00000516508 93 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 AL161670.1-201ENST00000554348 137 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 HSBP1P1-201ENST00000555205 166 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 AC015720.1-201ENST00000565251 277 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 AC125232.2-201ENST00000592457 143 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 C8orf59P2-201ENST00000603441 271 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 AL133255.1-201ENST00000606374 441 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 AC068205.3-201ENST00000636385 468 ntBASIC1.55□□□□□ -2.16
TNFRSF4P43489 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.55□□□□□ -2.16
TNFRSF4P43489 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
TNFRSF4P43489 MIR424-201ENST00000362227 98 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 RNA5SP361-201ENST00000362686 118 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 Y_RNA.61-201ENST00000362835 102 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 RNU6-797P-201ENST00000363101 109 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 SNORA7.1-201ENST00000363750 139 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 Y_RNA.315-201ENST00000365117 102 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 Y_RNA.428-201ENST00000384078 102 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 Y_RNA.431-201ENST00000384086 102 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 RNU6-281P-201ENST00000384212 103 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 Y_RNA.463-201ENST00000384271 102 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 EIF1P2-201ENST00000428233 350 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 AC069257.2-201ENST00000441819 155 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.54□□□□□ -2.16
TNFRSF4P43489 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.54□□□□□ -2.16
TNFRSF4P43489 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.54□□□□□ -2.16
TNFRSF4P43489 RNU7-57P-201ENST00000459540 60 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 RNU6-1170P-201ENST00000515974 106 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 RNU6-1146P-201ENST00000516282 102 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 RNU6-107P-201ENST00000516643 102 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 SNORD116.3-201ENST00000517176 78 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 AC091144.1-201ENST00000519573 138 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 AC144568.1-201ENST00000520139 137 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.54□□□□□ -2.16
TNFRSF4P43489 MZT1P2-201ENST00000604387 248 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 MIR8070-201ENST00000616510 88 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 AC087588.2-201ENST00000617667 426 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 AC008873.1-201ENST00000625051 138 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.54□□□□□ -2.16
TNFRSF4P43489 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.54□□□□□ -2.16
TNFRSF4P43489 MTND5P35-201ENST00000557537 1720 ntBASIC1.54□□□□□ -2.16
TNFRSF4P43489 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
TNFRSF4P43489 SNORA25.9-201ENST00000365087 128 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 Y_RNA.327-201ENST00000365201 102 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 MIR499A-201ENST00000384903 122 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 AL117342.1-201ENST00000404861 406 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 Y_RNA.592-201ENST00000410274 109 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 RNU6-57P-201ENST00000411348 103 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.53□□□□□ -2.16
TNFRSF4P43489 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.53□□□□□ -2.16
TNFRSF4P43489 AC096644.2-201ENST00000429278 159 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 AC245047.4-201ENST00000433189 144 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 HSPE1P9-201ENST00000440046 311 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 UQCRBP2-201ENST00000447827 297 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 AC084364.2-201ENST00000546924 395 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 AC016925.2-201ENST00000605108 242 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 uc_338.20-201ENST00000621563 178 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 AC006001.4-201ENST00000622243 395 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 AC090574.1-201ENST00000623186 233 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 MIR338-201ENST00000636369 67 ntBASIC1.53□□□□□ -2.16
TNFRSF4P43489 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
TNFRSF4P43489 RNU6-1115P-201ENST00000362490 106 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 snoU2-30.2-201ENST00000362805 70 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 RNU4-13P-201ENST00000364019 141 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 SNORA72.2-201ENST00000365028 127 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 Y_RNA.460-201ENST00000384255 102 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 SNORA67.2-201ENST00000384300 149 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms