Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC017083.3-201ENST00000609955 700 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 uc_338.34-201ENST00000617467 174 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 AL390237.1-201ENST00000404226 1415 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 RNU6-222P-201ENST00000362438 107 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 SNORA1B-201ENST00000362535 133 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 RNU6-833P-201ENST00000363486 107 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 RNU6-716P-201ENST00000365621 103 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 RNU6-348P-201ENST00000384386 107 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 HMGN2P26-201ENST00000463169 339 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 RNU6-1129P-201ENST00000515964 104 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 RNA5SP330-201ENST00000517096 96 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 AC104576.1-201ENST00000524225 88 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 AP002004.2-201ENST00000531656 154 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 AC103705.1-201ENST00000619013 241 ntBASIC0.17□□□□□ -2.38
HLA-DMBP28068 RNU6-793P-201ENST00000384233 104 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 RNU6-925P-201ENST00000384629 104 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 RNU6-177P-201ENST00000411257 104 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 MTCYBP8-201ENST00000422855 651 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 AC073415.1-201ENST00000449240 153 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 AC091021.1-201ENST00000468051 388 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 AC010469.2-201ENST00000496412 480 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 AC010598.1-201ENST00000510378 103 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 RNU6-189P-201ENST00000516120 101 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 RNU4ATAC8P-201ENST00000516196 109 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 RNU6-1198P-201ENST00000516904 67 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 AC023157.2-201ENST00000540596 141 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 AC016597.2-201ENST00000613256 341 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 AC005609.4-201ENST00000625071 447 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 AC068137.4-201ENST00000638485 296 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 MTND4P12-201ENST00000498999 1377 ntBASIC0.16□□□□□ -2.38
HLA-DMBP28068 Y_RNA.115-201ENST00000363272 98 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 SNORD115-32-201ENST00000364079 82 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 Y_RNA.258-201ENST00000364613 105 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 RNU6-1327P-201ENST00000365302 105 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 RNY1P8-201ENST00000383970 114 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 Y_RNA.415-201ENST00000384012 112 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 Y_RNA.560-201ENST00000384689 102 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 MIR140-201ENST00000385282 100 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 SNORD111-201ENST00000408139 94 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 MIR1827-201ENST00000408549 66 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 MIR1197-201ENST00000408818 88 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 RNU6-584P-201ENST00000410350 95 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 RNA5SP222-201ENST00000411039 105 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 RNU6-325P-201ENST00000411132 105 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 MTATP6P18-201ENST00000417994 673 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 MTCO2P11-201ENST00000431069 680 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.15□□□□□ -2.39
HLA-DMBP28068 MTND4P18-201ENST00000447010 465 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 AC067940.1-201ENST00000458411 300 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.15□□□□□ -2.39
HLA-DMBP28068 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.15□□□□□ -2.39
HLA-DMBP28068 RN7SKP164-201ENST00000516138 266 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 SNORA25.14-201ENST00000516481 132 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 RNU7-172P-201ENST00000517125 64 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 AC036111.3-201ENST00000526389 112 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 AL157687.1-201ENST00000554853 619 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 AL138726.1-201ENST00000614873 333 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 AC100810.6-201ENST00000638068 285 ntBASIC0.15□□□□□ -2.39
HLA-DMBP28068 Y_RNA.159-201ENST00000363674 87 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 RNU6-82P-201ENST00000363970 107 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 SNORA36.2-201ENST00000384004 127 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 SNORD105-201ENST00000386910 85 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 MIR891A-201ENST00000401237 79 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.14□□□□□ -2.39
HLA-DMBP28068 MTCO2P18-201ENST00000457151 658 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 MTND1P22-201ENST00000510572 951 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 AF235103.2-201ENST00000525753 346 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 RPL21P9-201ENST00000556149 474 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.14□□□□□ -2.39
HLA-DMBP28068 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.14□□□□□ -2.39
HLA-DMBP28068 AC008536.2-201ENST00000607284 349 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 RNU6-94P-201ENST00000607728 107 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 AL008636.1-201ENST00000625038 1018 ntBASIC0.14□□□□□ -2.39
HLA-DMBP28068 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.14□□□□□ -2.39
HLA-DMBP28068 RNU4-21P-201ENST00000362802 126 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 RNU4-67P-201ENST00000364569 141 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 RNU6-996P-201ENST00000365438 107 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 MIR521-1-201ENST00000384902 87 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AL359672.1-201ENST00000442302 409 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC079354.2-201ENST00000453523 154 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC091179.3-201ENST00000474761 144 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 MTCO1P29-201ENST00000496868 288 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC104383.1-201ENST00000530297 370 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC087683.1-201ENST00000591187 441 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC010620.1-201ENST00000601088 1102 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC023932.2-201ENST00000603176 175 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC079248.2-201ENST00000623779 326 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 AC027279.3-201ENST00000625055 122 ntBASIC0.13□□□□□ -2.39
HLA-DMBP28068 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
HLA-DMBP28068 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.12□□□□□ -2.39
HLA-DMBP28068 AC121333.1-201ENST00000567488 2709 ntBASIC0.12□□□□□ -2.39
HLA-DMBP28068 FGF7P2-201ENST00000332473 296 ntBASIC0.12□□□□□ -2.39
HLA-DMBP28068 RNU6-349P-201ENST00000362402 107 ntBASIC0.12□□□□□ -2.39
HLA-DMBP28068 SNORD50.1-201ENST00000362987 71 ntBASIC0.12□□□□□ -2.39
HLA-DMBP28068 RNU6-873P-201ENST00000363833 107 ntBASIC0.12□□□□□ -2.39
HLA-DMBP28068 RNU6-553P-201ENST00000364047 96 ntBASIC0.12□□□□□ -2.39
HLA-DMBP28068 Y_RNA.267-201ENST00000364679 109 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms