| STAG3L3 | P0CL85 | AC010999.1-201 | ENST00000611856 | 324 nt | BASIC | 0.39 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | Z69908.1-201 | ENST00000622603 | 247 nt | BASIC | 0.39 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC027279.3-201 | ENST00000625055 | 122 nt | BASIC | 0.39 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | SENP7-207 | ENST00000394095 | 4945 nt | APPRIS P3 TSL 1 (best) BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | Y_RNA.167-201 | ENST00000363735 | 109 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | SNORD114-27-201 | ENST00000363766 | 70 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNU6-392P-201 | ENST00000364926 | 101 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | Y_RNA.296-201 | ENST00000364930 | 108 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MTCYBP4-201 | ENST00000401524 | 249 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | ZNF885P-201 | ENST00000420174 | 1098 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | Z82205.1-201 | ENST00000428456 | 297 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | DMD-AS3-201 | ENST00000439592 | 293 nt | TSL 3 BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | DAP3P1-201 | ENST00000441522 | 278 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RPS3AP17-201 | ENST00000472594 | 777 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC083798.1-201 | ENST00000472671 | 131 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNU6-1291P-201 | ENST00000516591 | 104 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AL356133.2-201 | ENST00000521572 | 371 nt | TSL 3 BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | DEFB108E-201 | ENST00000524692 | 240 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC011604.1-201 | ENST00000545978 | 196 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MIR6767-201 | ENST00000637302 | 66 nt | BASIC | 0.38 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | C18orf54-201 | ENST00000300091 | 5237 nt | APPRIS P1 TSL 1 (best) BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MIR452-201 | ENST00000385020 | 85 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MIR520G-201 | ENST00000385064 | 90 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC018865.2-201 | ENST00000423631 | 129 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC244098.3-201 | ENST00000424803 | 96 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | HMGN2P26-201 | ENST00000463169 | 339 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MTND3P7-201 | ENST00000474435 | 343 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RN7SL429P-201 | ENST00000479090 | 223 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RN7SL489P-201 | ENST00000486185 | 223 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RPL30P10-201 | ENST00000488148 | 337 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RN7SL327P-201 | ENST00000488659 | 223 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC069528.1-201 | ENST00000490344 | 705 nt | TSL 3 BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNA5SP20-201 | ENST00000515976 | 84 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNU6-415P-201 | ENST00000516252 | 97 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC134698.4-201 | ENST00000523451 | 826 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC022166.2-201 | ENST00000566030 | 536 nt | TSL 4 BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC011195.1-201 | ENST00000578177 | 177 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC022596.1-201 | ENST00000582895 | 302 nt | TSL 5 BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC120024.3-201 | ENST00000603167 | 156 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AP000942.3-201 | ENST00000603702 | 160 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC087752.4-201 | ENST00000605911 | 462 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AP001330.5-201 | ENST00000607176 | 411 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RN7SL853P-201 | ENST00000617250 | 223 nt | BASIC | 0.37 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNU4-41P-201 | ENST00000364426 | 143 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNU6-407P-201 | ENST00000365280 | 104 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MIR514A2-201 | ENST00000385131 | 88 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MIR514A3-201 | ENST00000385132 | 88 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MIR1185-1-201 | ENST00000408598 | 86 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | Z98949.2-201 | ENST00000440996 | 144 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MTND3P16-201 | ENST00000452205 | 344 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC018710.1-201 | ENST00000506509 | 158 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC107208.1-201 | ENST00000508265 | 519 nt | TSL 4 BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | Y_RNA.683-201 | ENST00000516508 | 93 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNU6-1116P-201 | ENST00000517269 | 99 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC007495.2-202 | ENST00000564102 | 535 nt | TSL 4 BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC133485.1-201 | ENST00000567176 | 124 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC138907.6-201 | ENST00000568401 | 126 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC090371.2-202 | ENST00000582239 | 644 nt | TSL 5 BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AL008636.1-201 | ENST00000625038 | 1018 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | MIR6516-201 | ENST00000630554 | 81 nt | BASIC | 0.36 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | Y_RNA.151-201 | ENST00000363566 | 112 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNU6-1322P-201 | ENST00000364309 | 107 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | SNORA69-201 | ENST00000383895 | 132 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | SNORD111-201 | ENST00000408139 | 94 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | RNU5A-5P-201 | ENST00000411054 | 116 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC244023.1-201 | ENST00000426884 | 112 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | ACA59.1-201 | ENST00000515966 | 143 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC242498.1-201 | ENST00000604134 | 111 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC243994.1-201 | ENST00000618627 | 109 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | AC073544.1-201 | ENST00000600110 | 1595 nt | BASIC | 0.35 | □□□□□ -2.35 | | |
| STAG3L3 | P0CL85 | SNORA27.1-201 | ENST00000362604 | 124 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | SNORA36.2-201 | ENST00000384004 | 127 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RNU6-994P-201 | ENST00000410507 | 111 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RNU4-55P-201 | ENST00000410731 | 137 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RNA5SP222-201 | ENST00000411039 | 105 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AC092473.1-201 | ENST00000441098 | 221 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RPS20P10-201 | ENST00000451209 | 253 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AC019155.3-201 | ENST00000454957 | 600 nt | TSL 2 BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AP003174.2-201 | ENST00000544663 | 294 nt | TSL 3 BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | MTATP6P24-201 | ENST00000576835 | 677 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AC016727.1-205 | ENST00000605437 | 569 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AC099654.12-201 | ENST00000639868 | 649 nt | BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | SERPINI2-207 | ENST00000476257 | 1837 nt | APPRIS P1 TSL 5 BASIC | 0.34 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AC134026.1-201 | ENST00000623249 | 2239 nt | BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | DEUP1-202 | ENST00000525646 | 1920 nt | TSL 1 (best) BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | SNORA25.3-201 | ENST00000363205 | 127 nt | BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RNA5SP48-201 | ENST00000363969 | 126 nt | BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | MIR520C-201 | ENST00000385005 | 87 nt | BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AL590422.1-201 | ENST00000451829 | 364 nt | TSL 3 BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | HMGN1P7-201 | ENST00000491722 | 313 nt | BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RN7SKP298-201 | ENST00000515950 | 94 nt | BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AC097520.1-201 | ENST00000624435 | 385 nt | BASIC | 0.33 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | PTPN22-203 | ENST00000460620 | 1794 nt | TSL 1 (best) BASIC | 0.32 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RNU6-254P-201 | ENST00000363377 | 107 nt | BASIC | 0.32 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | Y_RNA.140-201 | ENST00000363474 | 103 nt | BASIC | 0.32 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | LINC00583-201 | ENST00000381010 | 387 nt | TSL 2 BASIC | 0.32 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RNU6-1297P-201 | ENST00000384415 | 104 nt | BASIC | 0.32 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | RNU6ATAC33P-201 | ENST00000408647 | 126 nt | BASIC | 0.32 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | MTCO2P12-201 | ENST00000427426 | 682 nt | BASIC | 0.32 | □□□□□ -2.36 | | |
| STAG3L3 | P0CL85 | AL137792.2-201 | ENST00000443484 | 235 nt | BASIC | 0.32 | □□□□□ -2.36 | | |