Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.404-201ENST00000383978 102 ntBASIC1.36□□□□□ -2.19
SDC3O75056 RNU6-331P-201ENST00000384724 107 ntBASIC1.36□□□□□ -2.19
SDC3O75056 MIR329-1-201ENST00000385028 80 ntBASIC1.36□□□□□ -2.19
SDC3O75056 RNU6-876P-201ENST00000391295 104 ntBASIC1.36□□□□□ -2.19
SDC3O75056 TOMM22P2-201ENST00000430735 237 ntBASIC1.36□□□□□ -2.19
SDC3O75056 AC073910.1-201ENST00000445047 438 ntBASIC1.36□□□□□ -2.19
SDC3O75056 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.36□□□□□ -2.19
SDC3O75056 snoU13.27-201ENST00000459278 104 ntBASIC1.36□□□□□ -2.19
SDC3O75056 RPL31P58-201ENST00000469001 379 ntBASIC1.36□□□□□ -2.19
SDC3O75056 RPL7P42-201ENST00000481005 679 ntBASIC1.36□□□□□ -2.19
SDC3O75056 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.36□□□□□ -2.19
SDC3O75056 RNU6-902P-201ENST00000517212 91 ntBASIC1.36□□□□□ -2.19
SDC3O75056 AC125232.2-201ENST00000592457 143 ntBASIC1.36□□□□□ -2.19
SDC3O75056 MIR6078-201ENST00000611069 100 ntBASIC1.36□□□□□ -2.19
SDC3O75056 AL359075.3-201ENST00000613288 217 ntBASIC1.36□□□□□ -2.19
SDC3O75056 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.36□□□□□ -2.19
SDC3O75056 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
SDC3O75056 AC095038.3-201ENST00000634439 195 ntBASIC1.36□□□□□ -2.19
SDC3O75056 MTND5P10-201ENST00000603719 1809 ntBASIC1.36□□□□□ -2.19
SDC3O75056 AL161722.3-201ENST00000605789 2983 ntBASIC1.35□□□□□ -2.19
SDC3O75056 RNU6-874P-201ENST00000362390 105 ntBASIC1.35□□□□□ -2.19
SDC3O75056 RNU6-1266P-201ENST00000362794 105 ntBASIC1.35□□□□□ -2.19
SDC3O75056 SNORA75.4-201ENST00000391278 119 ntBASIC1.35□□□□□ -2.19
SDC3O75056 COX6CP10-201ENST00000416832 224 ntBASIC1.35□□□□□ -2.19
SDC3O75056 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.35□□□□□ -2.19
SDC3O75056 AL135790.2-201ENST00000437701 267 ntBASIC1.35□□□□□ -2.19
SDC3O75056 UBE2V1P7-201ENST00000446395 340 ntBASIC1.35□□□□□ -2.19
SDC3O75056 AC245517.4-201ENST00000448601 281 ntBASIC1.35□□□□□ -2.19
SDC3O75056 RNU1-123P-201ENST00000458950 160 ntBASIC1.35□□□□□ -2.19
SDC3O75056 AL163195.1-201ENST00000496941 348 ntBASIC1.35□□□□□ -2.19
SDC3O75056 AC103851.1-201ENST00000506833 274 ntBASIC1.35□□□□□ -2.19
SDC3O75056 RNU1-142P-201ENST00000516682 145 ntBASIC1.35□□□□□ -2.19
SDC3O75056 AC019176.1-201ENST00000518519 225 ntBASIC1.35□□□□□ -2.19
SDC3O75056 AC091144.1-201ENST00000519573 138 ntBASIC1.35□□□□□ -2.19
SDC3O75056 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.35□□□□□ -2.19
SDC3O75056 FRG2DP-202ENST00000566967 323 ntBASIC1.35□□□□□ -2.19
SDC3O75056 PISRT1.1-201ENST00000616930 107 ntBASIC1.35□□□□□ -2.19
SDC3O75056 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.35□□□□□ -2.19
SDC3O75056 AL121890.5-201ENST00000620848 304 ntBASIC1.35□□□□□ -2.19
SDC3O75056 AC006435.5-201ENST00000624486 112 ntBASIC1.35□□□□□ -2.19
SDC3O75056 SNORD33-201ENST00000362761 85 ntBASIC1.34□□□□□ -2.19
SDC3O75056 Y_RNA.116-201ENST00000363292 103 ntBASIC1.34□□□□□ -2.19
SDC3O75056 Y_RNA.122-201ENST00000363331 96 ntBASIC1.34□□□□□ -2.19
SDC3O75056 SNORD81.2-201ENST00000365153 76 ntBASIC1.34□□□□□ -2.19
SDC3O75056 RNU6-1145P-201ENST00000384246 107 ntBASIC1.34□□□□□ -2.19
SDC3O75056 MIR194-1-201ENST00000384892 85 ntBASIC1.34□□□□□ -2.19
SDC3O75056 RNA5SP323-201ENST00000391094 133 ntBASIC1.34□□□□□ -2.19
SDC3O75056 RNU6-1001P-201ENST00000411265 100 ntBASIC1.34□□□□□ -2.19
SDC3O75056 RBMX2P4-201ENST00000441256 376 ntBASIC1.34□□□□□ -2.19
SDC3O75056 RPS27P1-201ENST00000450552 247 ntBASIC1.34□□□□□ -2.19
SDC3O75056 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.34□□□□□ -2.19
SDC3O75056 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.34□□□□□ -2.19
SDC3O75056 RNA5SP102-201ENST00000516865 106 ntBASIC1.34□□□□□ -2.19
SDC3O75056 AL137100.2-201ENST00000555786 315 ntBASIC1.34□□□□□ -2.19
SDC3O75056 AL160236.1-201ENST00000556317 195 ntBASIC1.34□□□□□ -2.19
SDC3O75056 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.34□□□□□ -2.19
SDC3O75056 MIR3937-201ENST00000580135 106 ntBASIC1.34□□□□□ -2.19
SDC3O75056 MIR7974-201ENST00000615835 79 ntBASIC1.34□□□□□ -2.19
SDC3O75056 U6.73-201ENST00000619194 103 ntBASIC1.34□□□□□ -2.19
SDC3O75056 TPTEP1-208ENST00000636884 213 ntBASIC1.34□□□□□ -2.19
SDC3O75056 AP000648.3-201ENST00000623539 4507 ntBASIC1.33□□□□□ -2.2
SDC3O75056 U8.1-201ENST00000362843 134 ntBASIC1.33□□□□□ -2.2
SDC3O75056 RNU6-950P-201ENST00000384651 107 ntBASIC1.33□□□□□ -2.2
SDC3O75056 Y_RNA.557-201ENST00000384680 107 ntBASIC1.33□□□□□ -2.2
SDC3O75056 MIR320A-201ENST00000385302 82 ntBASIC1.33□□□□□ -2.2
SDC3O75056 AL353997.1-201ENST00000432936 108 ntBASIC1.33□□□□□ -2.2
SDC3O75056 Y_RNA.635-201ENST00000459041 101 ntBASIC1.33□□□□□ -2.2
SDC3O75056 RPL17P19-201ENST00000489069 552 ntBASIC1.33□□□□□ -2.2
SDC3O75056 HMGN1P12-201ENST00000499125 195 ntBASIC1.33□□□□□ -2.2
SDC3O75056 AC074133.1-201ENST00000515696 183 ntBASIC1.33□□□□□ -2.2
SDC3O75056 SCARNA16.2-201ENST00000516520 172 ntBASIC1.33□□□□□ -2.2
SDC3O75056 RNU7-128P-201ENST00000517247 62 ntBASIC1.33□□□□□ -2.2
SDC3O75056 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.33□□□□□ -2.2
SDC3O75056 APOOP3-201ENST00000536787 586 ntBASIC1.33□□□□□ -2.2
SDC3O75056 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.33□□□□□ -2.2
SDC3O75056 MIR3684-201ENST00000579779 74 ntBASIC1.33□□□□□ -2.2
SDC3O75056 PRR13P7-201ENST00000605538 430 ntBASIC1.33□□□□□ -2.2
SDC3O75056 MIR6504-201ENST00000613520 61 ntBASIC1.33□□□□□ -2.2
SDC3O75056 AC092794.2-201ENST00000620933 563 ntBASIC1.33□□□□□ -2.2
SDC3O75056 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SDC3O75056 MIR410-201ENST00000362222 80 ntBASIC1.32□□□□□ -2.2
SDC3O75056 SNORA4.2-201ENST00000365313 147 ntBASIC1.32□□□□□ -2.2
SDC3O75056 RNU6-1264P-201ENST00000383891 107 ntBASIC1.32□□□□□ -2.2
SDC3O75056 RNU6-203P-201ENST00000384038 104 ntBASIC1.32□□□□□ -2.2
SDC3O75056 MRPL35P1-201ENST00000404272 572 ntBASIC1.32□□□□□ -2.2
SDC3O75056 RNU4-14P-201ENST00000410858 122 ntBASIC1.32□□□□□ -2.2
SDC3O75056 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.32□□□□□ -2.2
SDC3O75056 SNORD65B-201ENST00000459126 73 ntBASIC1.32□□□□□ -2.2
SDC3O75056 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.32□□□□□ -2.2
SDC3O75056 AC010598.1-201ENST00000510378 103 ntBASIC1.32□□□□□ -2.2
SDC3O75056 RNU7-99P-201ENST00000516271 62 ntBASIC1.32□□□□□ -2.2
SDC3O75056 RN7SKP49-201ENST00000516675 260 ntBASIC1.32□□□□□ -2.2
SDC3O75056 SNORA20.3-201ENST00000516880 132 ntBASIC1.32□□□□□ -2.2
SDC3O75056 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.32□□□□□ -2.2
SDC3O75056 AC004584.2-201ENST00000570407 410 ntBASIC1.32□□□□□ -2.2
SDC3O75056 MIR4709-201ENST00000577272 72 ntBASIC1.32□□□□□ -2.2
SDC3O75056 AC015688.6-201ENST00000577737 104 ntBASIC1.32□□□□□ -2.2
SDC3O75056 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.32□□□□□ -2.2
SDC3O75056 AL669831.3-213ENST00000636676 183 ntBASIC1.32□□□□□ -2.2
SDC3O75056 AC099654.14-201ENST00000638599 341 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 178 ms