Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AL590632.1-201ENST00000424289 371 ntBASIC0.69□□□□□ -2.3
LSM1O15116 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.69□□□□□ -2.3
LSM1O15116 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.69□□□□□ -2.3
LSM1O15116 AC107401.1-201ENST00000503426 685 ntBASIC0.69□□□□□ -2.3
LSM1O15116 RNU6-947P-201ENST00000516264 106 ntBASIC0.69□□□□□ -2.3
LSM1O15116 RNU6-341P-201ENST00000516973 96 ntBASIC0.69□□□□□ -2.3
LSM1O15116 AC006362.1-201ENST00000567392 174 ntBASIC0.69□□□□□ -2.3
LSM1O15116 AL359880.1-201ENST00000621879 266 ntBASIC0.69□□□□□ -2.3
LSM1O15116 AC099654.12-201ENST00000639868 649 ntBASIC0.69□□□□□ -2.3
LSM1O15116 MTND5P26-201ENST00000426018 1752 ntBASIC0.69□□□□□ -2.3
LSM1O15116 AC068700.1-201ENST00000565862 3754 ntBASIC0.69□□□□□ -2.3
LSM1O15116 AC005592.1-201ENST00000566527 1640 ntBASIC0.68□□□□□ -2.3
LSM1O15116 SNORA1B-201ENST00000362535 133 ntBASIC0.68□□□□□ -2.3
LSM1O15116 RNA5SP361-201ENST00000362686 118 ntBASIC0.68□□□□□ -2.3
LSM1O15116 Y_RNA.184-201ENST00000363884 108 ntBASIC0.68□□□□□ -2.3
LSM1O15116 MIR517A-201ENST00000385001 87 ntBASIC0.68□□□□□ -2.3
LSM1O15116 RNU6-733P-201ENST00000410759 104 ntBASIC0.68□□□□□ -2.3
LSM1O15116 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.68□□□□□ -2.3
LSM1O15116 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
LSM1O15116 RPL39P39-201ENST00000455840 151 ntBASIC0.68□□□□□ -2.3
LSM1O15116 AC245047.8-201ENST00000456455 284 ntBASIC0.68□□□□□ -2.3
LSM1O15116 Y_RNA.638-201ENST00000459374 113 ntBASIC0.68□□□□□ -2.3
LSM1O15116 AC091021.1-201ENST00000468051 388 ntBASIC0.68□□□□□ -2.3
LSM1O15116 RNU7-172P-201ENST00000517125 64 ntBASIC0.68□□□□□ -2.3
LSM1O15116 POLR3GP2-201ENST00000588366 668 ntBASIC0.68□□□□□ -2.3
LSM1O15116 MIR6863-201ENST00000636112 90 ntBASIC0.68□□□□□ -2.3
LSM1O15116 AC090582.1-201ENST00000636321 199 ntBASIC0.68□□□□□ -2.3
LSM1O15116 CASC19-280ENST00000642102 1351 ntBASIC0.68□□□□□ -2.3
LSM1O15116 Y_RNA.265-201ENST00000364677 108 ntBASIC0.67□□□□□ -2.3
LSM1O15116 SNORD116-13-201ENST00000384408 92 ntBASIC0.67□□□□□ -2.3
LSM1O15116 MIR562-201ENST00000384894 95 ntBASIC0.67□□□□□ -2.3
LSM1O15116 MTCO3P40-201ENST00000392516 676 ntBASIC0.67□□□□□ -2.3
LSM1O15116 MIR942-201ENST00000401111 86 ntBASIC0.67□□□□□ -2.3
LSM1O15116 RPL30P16-201ENST00000419341 429 ntBASIC0.67□□□□□ -2.3
LSM1O15116 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.67□□□□□ -2.3
LSM1O15116 RNU7-90P-201ENST00000459216 62 ntBASIC0.67□□□□□ -2.3
LSM1O15116 AL049830.1-201ENST00000468034 425 ntBASIC0.67□□□□□ -2.3
LSM1O15116 AP000870.1-201ENST00000472927 406 ntBASIC0.67□□□□□ -2.3
LSM1O15116 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.67□□□□□ -2.3
LSM1O15116 AC134698.4-201ENST00000523451 826 ntBASIC0.67□□□□□ -2.3
LSM1O15116 OSBPL9P5-201ENST00000542581 171 ntBASIC0.67□□□□□ -2.3
LSM1O15116 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.67□□□□□ -2.3
LSM1O15116 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.67□□□□□ -2.3
LSM1O15116 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.67□□□□□ -2.3
LSM1O15116 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
LSM1O15116 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
LSM1O15116 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
LSM1O15116 SNORA20B-201ENST00000384220 132 ntBASIC0.66□□□□□ -2.3
LSM1O15116 RNU6-541P-201ENST00000384709 110 ntBASIC0.66□□□□□ -2.3
LSM1O15116 MIR526A1-201ENST00000384897 85 ntBASIC0.66□□□□□ -2.3
LSM1O15116 RNA5SP482-201ENST00000391269 118 ntBASIC0.66□□□□□ -2.3
LSM1O15116 RNU5A-5P-201ENST00000411054 116 ntBASIC0.66□□□□□ -2.3
LSM1O15116 RPS26P5-201ENST00000418544 335 ntBASIC0.66□□□□□ -2.3
LSM1O15116 ZNF885P-201ENST00000420174 1098 ntBASIC0.66□□□□□ -2.3
LSM1O15116 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.66□□□□□ -2.3
LSM1O15116 AL035398.1-201ENST00000430869 322 ntBASIC0.66□□□□□ -2.3
LSM1O15116 HMGN2P26-201ENST00000463169 339 ntBASIC0.66□□□□□ -2.3
LSM1O15116 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.66□□□□□ -2.3
LSM1O15116 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.66□□□□□ -2.3
LSM1O15116 AC027419.1-201ENST00000522976 328 ntBASIC0.66□□□□□ -2.3
LSM1O15116 AP003716.2-201ENST00000528260 108 ntBASIC0.66□□□□□ -2.3
LSM1O15116 AP002004.2-201ENST00000531656 154 ntBASIC0.66□□□□□ -2.3
LSM1O15116 MTND1P15-201ENST00000579262 949 ntBASIC0.66□□□□□ -2.3
LSM1O15116 MIR4781-201ENST00000585250 76 ntBASIC0.66□□□□□ -2.3
LSM1O15116 AC010620.1-201ENST00000601088 1102 ntBASIC0.66□□□□□ -2.3
LSM1O15116 AL353765.1-201ENST00000605514 183 ntBASIC0.66□□□□□ -2.3
LSM1O15116 AC010999.1-201ENST00000611856 324 ntBASIC0.66□□□□□ -2.3
LSM1O15116 AC124864.2-201ENST00000624736 186 ntBASIC0.66□□□□□ -2.3
LSM1O15116 ELL2P3-201ENST00000457883 1602 ntBASIC0.65□□□□□ -2.31
LSM1O15116 MIR96-201ENST00000362288 78 ntBASIC0.65□□□□□ -2.31
LSM1O15116 RNU1-93P-201ENST00000364704 169 ntBASIC0.65□□□□□ -2.31
LSM1O15116 RNU6-281P-201ENST00000384212 103 ntBASIC0.65□□□□□ -2.31
LSM1O15116 RNU6-908P-201ENST00000410160 94 ntBASIC0.65□□□□□ -2.31
LSM1O15116 Y_RNA.615-201ENST00000410769 117 ntBASIC0.65□□□□□ -2.31
LSM1O15116 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.65□□□□□ -2.31
LSM1O15116 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.65□□□□□ -2.31
LSM1O15116 COX6CP6-201ENST00000490840 228 ntBASIC0.65□□□□□ -2.31
LSM1O15116 AC117454.1-201ENST00000491120 168 ntBASIC0.65□□□□□ -2.31
LSM1O15116 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.65□□□□□ -2.31
LSM1O15116 ACA59.1-201ENST00000515966 143 ntBASIC0.65□□□□□ -2.31
LSM1O15116 RNU7-12P-201ENST00000516030 62 ntBASIC0.65□□□□□ -2.31
LSM1O15116 ZNF519P2-201ENST00000557032 169 ntBASIC0.65□□□□□ -2.31
LSM1O15116 AC010525.2-201ENST00000590920 195 ntBASIC0.65□□□□□ -2.31
LSM1O15116 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
LSM1O15116 RNU6-596P-201ENST00000365395 98 ntBASIC0.64□□□□□ -2.31
LSM1O15116 RNU1-139P-201ENST00000391307 165 ntBASIC0.64□□□□□ -2.31
LSM1O15116 SEPT14P3-201ENST00000439401 183 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AC104332.1-201ENST00000440471 797 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AL732372.2-207ENST00000445840 183 ntBASIC0.64□□□□□ -2.31
LSM1O15116 SEPT14P2-201ENST00000453405 183 ntBASIC0.64□□□□□ -2.31
LSM1O15116 LINC01399-202ENST00000458450 244 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AC098869.1-201ENST00000481627 292 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AC019235.1-201ENST00000503847 207 ntBASIC0.64□□□□□ -2.31
LSM1O15116 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.64□□□□□ -2.31
LSM1O15116 SEPT14P4-201ENST00000513445 186 ntBASIC0.64□□□□□ -2.31
LSM1O15116 RNU2-56P-201ENST00000516826 190 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AC022868.1-201ENST00000517767 391 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.64□□□□□ -2.31
LSM1O15116 FO082796.1-201ENST00000523795 183 ntBASIC0.64□□□□□ -2.31
LSM1O15116 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 145.3 ms