Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MIR548AD-201ENST00000584780 82 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 MIR4324-201ENST00000584846 72 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AC125232.2-201ENST00000592457 143 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AL022154.1-201ENST00000604698 785 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 Y_RNA.804-201ENST00000615262 101 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AC105081.1-201ENST00000617727 106 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 U6.73-201ENST00000619194 103 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 SCARNA4-201ENST00000629045 128 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AC091304.10-201ENST00000641554 121 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 MTND1P4-201ENST00000435196 415 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 ZNF736P1Y-201ENST00000440402 1276 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 AL049829.1-201ENST00000465411 156 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 RNU2-56P-201ENST00000516826 190 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 AC109479.2-201ENST00000517842 174 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 AC087894.1-201ENST00000538359 518 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 AC063944.3-201ENST00000609969 533 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 MIR1264-201ENST00000616374 69 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 MIR4251-201ENST00000635819 61 ntBASIC-1.32□□□□□ -2.62
CCDC88BA6NC98 RNU4-21P-201ENST00000362802 126 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 Y_RNA.65-201ENST00000362846 100 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 RNU6-205P-201ENST00000390858 107 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 RNU6-1093P-201ENST00000391194 107 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 MTCO2P33-201ENST00000402100 465 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 ELOCP21-201ENST00000412558 336 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 MTCO1P57-201ENST00000432182 261 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 RNU7-156P-201ENST00000517214 74 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 AC090617.3-201ENST00000573670 475 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 AC010525.2-201ENST00000590920 195 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 U4.2-201ENST00000618561 85 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 AC231657.1-201ENST00000624313 397 ntBASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 NAA50-211ENST00000630058 177 ntTSL 5 BASIC-1.33□□□□□ -2.62
CCDC88BA6NC98 AC099786.3-201ENST00000565735 1410 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 MIR148A-201ENST00000362215 68 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 RNU6-692P-201ENST00000384496 107 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 MIR516B2-201ENST00000385190 85 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 MIR1298-201ENST00000408783 112 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 AC244250.2-201ENST00000418731 148 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 AC074290.1-201ENST00000448883 135 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 AC093303.1-201ENST00000514549 295 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 RNU6-583P-201ENST00000516012 92 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 RNU7-43P-201ENST00000516554 64 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 MIR5706-201ENST00000579841 80 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 MIR5006-201ENST00000583027 110 ntBASIC-1.34□□□□□ -2.62
CCDC88BA6NC98 MIR365A-201ENST00000362260 87 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 RNU6-552P-201ENST00000362869 119 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 RNU6-873P-201ENST00000363833 107 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 SNORD56.4-201ENST00000363883 71 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 SNORA26.3-201ENST00000391119 136 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 AC109327.2-201ENST00000448339 378 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 RNU6-58P-201ENST00000517143 103 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 DEFB108A-201ENST00000530110 222 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 DEFB131E-202ENST00000602581 683 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 AL596327.1-201ENST00000603629 213 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 AC097478.2-201ENST00000610572 514 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 AL136221.1-201ENST00000621449 509 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 MIR6828-201ENST00000636181 60 ntBASIC-1.35□□□□□ -2.63
CCDC88BA6NC98 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 SNORD115-48-201ENST00000364764 76 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 RNA5SP482-201ENST00000391269 118 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 MTCO1P17-201ENST00000411522 491 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 PIGPP3-201ENST00000425307 415 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 AL133396.1-201ENST00000432048 687 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 MTND1P26-201ENST00000440488 538 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 RNU6-274P-201ENST00000459566 107 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 AP003168.1-201ENST00000530091 307 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 AC008521.1-201ENST00000587471 187 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 MIR6507-201ENST00000613630 70 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 AC099654.8-201ENST00000637757 681 ntBASIC-1.36□□□□□ -2.63
CCDC88BA6NC98 SNORD45.3-201ENST00000363836 72 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 Y_RNA.267-201ENST00000364679 109 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 RNU6-650P-201ENST00000365658 111 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 SNORA67.2-201ENST00000384300 149 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 RNU6-1122P-201ENST00000384449 107 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 Y_RNA.498-201ENST00000384460 102 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 MIR125B2-201ENST00000385128 89 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 SNORA75.1-201ENST00000391130 148 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC008134.1-201ENST00000420943 193 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC010486.2-201ENST00000505572 483 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC021146.6-201ENST00000514659 117 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC105029.1-201ENST00000520250 669 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AL512347.1-201ENST00000566420 503 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC174048.1-201ENST00000603389 144 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC107905.1-201ENST00000616204 426 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 RNU6-853P-201ENST00000364306 107 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 MIR136-201ENST00000385207 82 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 RNU2-42P-201ENST00000410697 113 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AL365184.2-201ENST00000431139 435 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 Z98949.2-201ENST00000440996 144 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC091951.3-201ENST00000504093 246 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 RNU6-881P-201ENST00000516813 102 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AP000753.3-201ENST00000604083 169 ntBASIC-1.37□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms