Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 AC091932.3-201ENST00000624223 323 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-454P-201ENST00000364292 107 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.288-201ENST00000364854 92 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.446-201ENST00000384178 104 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.483-201ENST00000384380 101 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-21P-201ENST00000384710 107 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.602-201ENST00000410535 92 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-1199P-201ENST00000411249 104 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 SRIP3-201ENST00000413200 219 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 AC005042.3-201ENST00000453230 174 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 RPPH1-2P-201ENST00000516688 293 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-570P-201ENST00000517051 105 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 MIR3684-201ENST00000579779 74 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 MIR6766-201ENST00000622641 72 ntBASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
PCDHA1Q9Y5I3 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 MIR6073-201ENST00000352083 89 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 MIR335-201ENST00000362173 94 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-743P-201ENST00000364151 106 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-102P-201ENST00000384485 104 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-1235P-201ENST00000384559 107 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.541-201ENST00000384640 113 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-1072P-201ENST00000384703 107 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-443P-201ENST00000384780 107 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 RNU4-30P-201ENST00000410245 143 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 AL121890.1-201ENST00000435457 205 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 MTCO1P44-201ENST00000441935 243 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 SNORD127-201ENST00000458892 86 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-498P-201ENST00000459468 107 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 RPS29P21-201ENST00000496272 170 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 AC087441.2-201ENST00000529141 262 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 AC004486.1-201ENST00000546846 233 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 MIR3670-2-201ENST00000582974 65 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 MIR3670-1-201ENST00000584160 65 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 MIR3670-3-201ENST00000584855 65 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 AC062037.2-201ENST00000610137 73 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 MIR3670-4-201ENST00000612260 65 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 AP001282.2-201ENST00000616149 309 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 snoZ196.1-201ENST00000625269 89 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 Z82195.2-201ENST00000612348 18351 ntBASIC2.6□□□□□ -1.99
PCDHA1Q9Y5I3 AC010615.1-201ENST00000594254 1764 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 SNORA25.6-201ENST00000364121 118 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.243-201ENST00000364481 109 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.286-201ENST00000364813 102 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-290P-201ENST00000365212 101 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.331-201ENST00000365267 102 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 MIR221-201ENST00000385135 110 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 MT-TG-201ENST00000387429 68 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 PRELID3BP1-201ENST00000457142 540 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 RNU7-26P-201ENST00000458980 63 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-221P-201ENST00000459541 99 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 HMGB3P17-201ENST00000504195 649 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 YWHAEP4-201ENST00000505390 198 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-991P-201ENST00000516168 107 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 CYCSP26-201ENST00000534107 320 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 AC023157.2-201ENST00000540596 141 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 MIR1273D-201ENST00000577266 86 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 MIR4648-201ENST00000580107 72 ntBASIC2.59□□□□□ -1.99
PCDHA1Q9Y5I3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.618-201ENST00000410949 107 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 AC139712.2-201ENST00000424302 339 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 AL357134.1-201ENST00000445848 426 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 AC107222.1-201ENST00000510899 637 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 RNU6-1338P-201ENST00000516328 91 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 RNU6-966P-201ENST00000516479 104 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 AC008749.1-201ENST00000597650 306 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 AC006380.1-201ENST00000603598 186 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 AC006001.4-201ENST00000622243 395 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 MIR6873-201ENST00000622788 63 ntBASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.58□□□□□ -2
PCDHA1Q9Y5I3 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 RNU6-418P-201ENST00000384035 107 ntBASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 RNU6-505P-201ENST00000384427 107 ntBASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 EDDM3CP-201ENST00000415977 425 ntBASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 SUMO1P4-201ENST00000429430 302 ntBASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 SUMO1P2-201ENST00000452524 304 ntBASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 RNU6-1132P-201ENST00000459214 107 ntBASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 AC010531.2-201ENST00000465012 153 ntBASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 RNU6-155P-201ENST00000516347 100 ntBASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 AC005828.6-201ENST00000606610 232 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 143.8 ms