Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC107393.1-201ENST00000512403 346 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 RNU6-1137P-201ENST00000517073 99 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 AL109918.3-201ENST00000603072 338 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 AC005034.5-201ENST00000604219 466 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 AL353149.1-201ENST00000610667 244 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.812-201ENST00000610788 101 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 AC006157.1-201ENST00000611750 366 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.784-201ENST00000613803 101 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 AL773524.1-201ENST00000614065 229 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.787-201ENST00000616522 101 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.780-201ENST00000617336 101 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.801-201ENST00000619005 101 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 RNU6-862P-201ENST00000362804 105 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.314-201ENST00000365114 102 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 SNORA69.1-201ENST00000390904 137 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.645-201ENST00000391229 102 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.595-201ENST00000410403 105 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 AC114482.1-201ENST00000418010 247 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 AC244636.1-201ENST00000421152 228 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 AC099677.2-201ENST00000436385 175 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 MIR4419B-201ENST00000577260 68 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 MIR5094-201ENST00000578766 85 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 AC016925.2-201ENST00000605108 242 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 AC091932.3-201ENST00000624223 323 ntBASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
LIMA1Q9UHB6 ZNF72P-201ENST00000425869 1908 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 SNORA63-201ENST00000363450 132 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 RNU6-1145P-201ENST00000384246 107 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 RNU6-318P-201ENST00000384283 103 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 AL117342.1-201ENST00000404861 406 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 MIR1185-2-201ENST00000408687 86 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.592-201ENST00000410274 109 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 AC016909.1-201ENST00000415916 166 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 AC008134.1-201ENST00000420943 193 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2□□□□□ -2.09
LIMA1Q9UHB6 RPL23AP6-201ENST00000446637 472 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 UQCRBP2-201ENST00000447827 297 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2□□□□□ -2.09
LIMA1Q9UHB6 RNA5SP57-201ENST00000459463 123 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 RN7SKP49-201ENST00000516675 260 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 MIR2355-201ENST00000517199 87 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 AC025647.1-201ENST00000517879 253 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 CYCSP23-201ENST00000519781 313 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 SUB1P4-201ENST00000566062 339 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2□□□□□ -2.09
LIMA1Q9UHB6 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2□□□□□ -2.09
LIMA1Q9UHB6 AL627230.6-201ENST00000611129 280 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 AL357075.2-201ENST00000614906 189 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 AL606534.2-204ENST00000635008 178 ntBASIC2□□□□□ -2.09
LIMA1Q9UHB6 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 snoU2-30.2-201ENST00000362805 70 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 RNA5SP212-201ENST00000391223 107 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 AC112492.4-201ENST00000456549 352 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 RNU7-169P-201ENST00000459456 61 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 RPL23AP94-201ENST00000512518 302 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 RNU6-107P-201ENST00000516643 102 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 AC091144.1-201ENST00000519573 138 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 AC144568.1-201ENST00000520139 137 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 AL442663.2-201ENST00000554385 511 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 AC091544.4-201ENST00000555268 342 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 AC069114.2-201ENST00000604699 304 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
LIMA1Q9UHB6 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 AC091812.1-201ENST00000432235 1948 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 RNU6-1301P-201ENST00000362724 104 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.202-201ENST00000364083 110 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 RNU1-96P-201ENST00000364163 162 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 SNORA63C-201ENST00000364578 129 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 MRPL42P3-201ENST00000401492 326 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 RNA5SP100-201ENST00000410903 110 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 RNA5SP59-201ENST00000410922 110 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 AC009310.1-201ENST00000414414 451 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 HMGN2P34-201ENST00000437647 269 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 AL118496.2-201ENST00000448300 230 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 RPS29P11-201ENST00000496507 171 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 RNU6-1146P-201ENST00000516282 102 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 RNU6-988P-201ENST00000519081 107 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 MIR4680-201ENST00000580906 66 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 MIR5188-201ENST00000583467 113 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 AC008749.1-201ENST00000597650 306 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 MIR338-201ENST00000636369 67 ntBASIC1.98□□□□□ -2.09
LIMA1Q9UHB6 U8.2-201ENST00000363156 134 ntBASIC1.97□□□□□ -2.09
LIMA1Q9UHB6 RNU6-708P-201ENST00000384217 107 ntBASIC1.97□□□□□ -2.09
LIMA1Q9UHB6 AL590004.1-201ENST00000405321 300 ntBASIC1.97□□□□□ -2.09
LIMA1Q9UHB6 MIR1253-201ENST00000408273 105 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms