Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.4□□□□□ -2.19
LHX3Q9UBR4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.4□□□□□ -2.19
LHX3Q9UBR4 AL163195.1-201ENST00000496941 348 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.4□□□□□ -2.19
LHX3Q9UBR4 RNU1-142P-201ENST00000516682 145 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 RNU6-1213P-201ENST00000517075 94 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 AP003033.1-201ENST00000527244 415 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.4□□□□□ -2.19
LHX3Q9UBR4 AC093023.1-201ENST00000547375 507 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 MIR5701-3-201ENST00000578890 82 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 MIR5701-1-201ENST00000585138 82 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 AC122108.2-201ENST00000611946 526 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 MIR5701-2-201ENST00000615634 82 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 PISRT1.1-201ENST00000616930 107 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 MIR8063-201ENST00000621930 81 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 AC095038.3-201ENST00000634439 195 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
LHX3Q9UBR4 MTND5P10-201ENST00000603719 1809 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RNU6-874P-201ENST00000362390 105 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RNU6-1266P-201ENST00000362794 105 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RNU6-997P-201ENST00000384725 107 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RNU6-700P-201ENST00000391043 107 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 SNORA75.4-201ENST00000391278 119 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 MIR190B-201ENST00000401119 79 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RNU4-14P-201ENST00000410858 122 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RPL23AP50-201ENST00000434149 455 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 HMGN1P12-201ENST00000499125 195 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RNU6-1114P-201ENST00000516022 107 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 SCARNA16.2-201ENST00000516520 172 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RNU6-107P-201ENST00000516643 102 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 RNU1-92P-201ENST00000517017 135 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.39□□□□□ -2.19
LHX3Q9UBR4 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.39□□□□□ -2.19
LHX3Q9UBR4 AL121579.1-201ENST00000555129 305 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 MIR4421-201ENST00000578133 69 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 AL359075.3-201ENST00000613288 217 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.39□□□□□ -2.19
LHX3Q9UBR4 MTND5P35-201ENST00000557537 1720 ntBASIC1.39□□□□□ -2.19
LHX3Q9UBR4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
LHX3Q9UBR4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.38□□□□□ -2.19
LHX3Q9UBR4 SNORD1A-201ENST00000364968 72 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 SNORA4.2-201ENST00000365313 147 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 RNU1-139P-201ENST00000391307 165 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 RN7SKP51-201ENST00000410781 304 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 RNU6-1001P-201ENST00000411265 100 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 RNU6-1304P-201ENST00000411374 106 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.38□□□□□ -2.19
LHX3Q9UBR4 RNU6-970P-201ENST00000516312 107 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.683-201ENST00000516508 93 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.38□□□□□ -2.19
LHX3Q9UBR4 AC091144.1-201ENST00000519573 138 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.38□□□□□ -2.19
LHX3Q9UBR4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.38□□□□□ -2.19
LHX3Q9UBR4 MIR4709-201ENST00000577272 72 ntBASIC1.38□□□□□ -2.19
LHX3Q9UBR4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.38□□□□□ -2.19
LHX3Q9UBR4 SNORD81.2-201ENST00000365153 76 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 RNU6-203P-201ENST00000384038 104 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.595-201ENST00000410403 105 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.37□□□□□ -2.19
LHX3Q9UBR4 MTCYBP10-201ENST00000424905 650 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC092423.1-201ENST00000430165 186 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 MTND4P18-201ENST00000447010 465 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC245517.4-201ENST00000448601 281 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC009474.2-201ENST00000451383 136 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 RPS29P29-201ENST00000456396 171 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 U8.22-201ENST00000459141 133 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 RPL31P58-201ENST00000469001 379 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 RPS26P55-201ENST00000471178 356 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC105029.1-201ENST00000520250 669 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AL137100.2-201ENST00000555786 315 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 FRG2DP-202ENST00000566967 323 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC125232.2-201ENST00000592457 143 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC022432.1-201ENST00000595739 310 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC016727.1-205ENST00000605437 569 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 AC099654.5-201ENST00000636479 350 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 TPTEP1-208ENST00000636884 213 ntBASIC1.37□□□□□ -2.19
LHX3Q9UBR4 WWP1P1-201ENST00000466609 2769 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
LHX3Q9UBR4 SNORD33-201ENST00000362761 85 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 SNORA7.1-201ENST00000363750 139 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.364-201ENST00000365532 101 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 RNU6-950P-201ENST00000384651 107 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.557-201ENST00000384680 107 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 RNA5SP109-201ENST00000391010 116 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 FGF7P8-201ENST00000402994 292 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 RNU6-1186P-201ENST00000410429 97 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AL161935.2-201ENST00000414627 60 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 EIF1P2-201ENST00000428233 350 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AC005002.2-201ENST00000438228 269 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 RNU1-123P-201ENST00000458950 160 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AC004223.1-201ENST00000479840 271 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AC079140.2-201ENST00000506193 142 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 RNA5SP445-201ENST00000515889 115 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AC027419.1-201ENST00000522976 328 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms