Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 Y_RNA.505-201ENST00000384489 102 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 RNA5SP109-201ENST00000391010 116 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 RNA5SP323-201ENST00000391094 133 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 MIR190B-201ENST00000401119 79 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 USP9YP16-201ENST00000430287 407 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 AC005002.2-201ENST00000438228 269 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 AL603825.1-201ENST00000438481 80 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 AC069257.2-201ENST00000441819 155 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 NDUFB4P10-201ENST00000452541 359 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 USP9YP23-201ENST00000455085 407 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 RNU7-87P-201ENST00000459343 62 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 AC046134.1-201ENST00000514454 666 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 RNU6-1114P-201ENST00000516022 107 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 RNU6-107P-201ENST00000516643 102 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 AC091144.1-201ENST00000519573 138 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 MIR4422-201ENST00000581938 83 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 AL157834.3-201ENST00000615543 103 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 MIR8063-201ENST00000621930 81 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 WWP1P1-201ENST00000466609 2769 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 ICE2P2-201ENST00000483823 2787 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 RNU6-874P-201ENST00000362390 105 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 RNU6-593P-201ENST00000364716 112 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.482-201ENST00000384377 111 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 RNU6-876P-201ENST00000391295 104 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 RNU6-955P-201ENST00000410497 104 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 AC004965.1-201ENST00000413033 213 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 MTND4P18-201ENST00000447010 465 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 snoU13.27-201ENST00000459278 104 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 HMGN1P12-201ENST00000499125 195 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 AC090821.2-201ENST00000523552 176 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 AC093023.1-201ENST00000547375 507 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 AL121579.1-201ENST00000555129 305 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 PRR13P7-201ENST00000605538 430 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 AL353770.2-201ENST00000620024 78 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 U6.108-201ENST00000637764 58 ntBASIC1.43□□□□□ -2.18
VPS54Q9P1Q0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 RNU6-845P-201ENST00000362578 103 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 RNU5F-3P-201ENST00000363767 117 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 SNORD1A-201ENST00000364968 72 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 SNORA72.2-201ENST00000365028 127 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 MIR515-2-201ENST00000384883 83 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 MIR515-1-201ENST00000384884 83 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 MT-TL1-201ENST00000386347 75 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 RNU1-139P-201ENST00000391307 165 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.595-201ENST00000410403 105 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 RNU6-1186P-201ENST00000410429 97 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 MTND1P2-201ENST00000430604 821 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 AL606517.2-201ENST00000442855 241 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.683-201ENST00000516508 93 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 RNU1-142P-201ENST00000516682 145 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 RNU6-1213P-201ENST00000517075 94 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 AC027419.1-201ENST00000522976 328 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 SUB1P3-201ENST00000564581 315 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 AC005668.1-201ENST00000571142 476 ntBASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.279-201ENST00000364763 95 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.557-201ENST00000384680 107 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 RNU6-700P-201ENST00000391043 107 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 FGF7P8-201ENST00000402994 292 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 RNU4-14P-201ENST00000410858 122 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 RNU6-1001P-201ENST00000411265 100 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 COX6CP10-201ENST00000416832 224 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 SDAD1P3-201ENST00000427380 333 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 EIF1P2-201ENST00000428233 350 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 U8.22-201ENST00000459141 133 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 MTND4P17-201ENST00000470444 350 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 RPS26P55-201ENST00000471178 356 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 SCARNA16.2-201ENST00000516520 172 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 AL160236.1-201ENST00000556317 195 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 AC090617.3-201ENST00000573670 475 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 AL359075.3-201ENST00000613288 217 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 PISRT1.1-201ENST00000616930 107 ntBASIC1.41□□□□□ -2.18
VPS54Q9P1Q0 MIR302D-201ENST00000362275 68 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 Y_RNA.364-201ENST00000365532 101 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 MIR329-1-201ENST00000385028 80 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 SNORA75.4-201ENST00000391278 119 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 RPL21P1-201ENST00000399532 476 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 PDCL2P1-201ENST00000419302 352 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 AC010154.1-201ENST00000425857 269 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 SNORD65B-201ENST00000459126 73 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 Y_RNA.638-201ENST00000459374 113 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 AC082651.2-201ENST00000496833 166 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms