Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-346P-201ENST00000516288 111 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 RNU1-143P-201ENST00000516296 146 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 MIR4744-201ENST00000581563 82 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 U1.23-201ENST00000610293 146 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 RNU1-68P-201ENST00000615382 146 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 U1.39-201ENST00000621562 146 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 snoZ196.1-201ENST00000625269 89 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 AC134026.1-201ENST00000623249 2239 ntBASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 RNU4-84P-201ENST00000364200 139 ntBASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 SNORD109B-201ENST00000458961 67 ntBASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 SNORD109A-201ENST00000459128 67 ntBASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 SEM1P1-201ENST00000506694 209 ntBASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC87Q9NVE4 RNU6-1205P-201ENST00000363625 106 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 SNORA9.2-201ENST00000365361 133 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 RNU6-975P-201ENST00000384296 105 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 RPL23AP7-203ENST00000449021 469 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 AC006539.3-201ENST00000454258 129 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 RNU6-221P-201ENST00000459541 99 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 UBL5P3-201ENST00000475112 231 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 SCARNA3-201ENST00000517097 143 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 AC093331.1-201ENST00000521474 169 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 AL713866.2-201ENST00000603579 219 ntBASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC87Q9NVE4 SNORD116-18-201ENST00000383961 92 ntBASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 SNORA70B-201ENST00000384210 135 ntBASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 RNU7-141P-201ENST00000459304 62 ntBASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 AC010401.1-201ENST00000463867 348 ntBASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 AC010598.1-201ENST00000510378 103 ntBASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 RNU6-948P-201ENST00000516374 107 ntBASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 AC069294.1-201ENST00000608397 350 ntBASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC87Q9NVE4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 RNU1-72P-201ENST00000362976 153 ntBASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 RNU6-944P-201ENST00000364023 107 ntBASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 Y_RNA.343-201ENST00000365354 112 ntBASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 RNU6-578P-201ENST00000390980 103 ntBASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 RNU2-52P-201ENST00000410680 190 ntBASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 SEPT7P4-201ENST00000437076 306 ntBASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 MIR449C-201ENST00000516047 92 ntBASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 MIR4431-201ENST00000579990 94 ntBASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC87Q9NVE4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 RNU6-1048P-201ENST00000364054 107 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 RNU6-81P-201ENST00000365608 104 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 Y_RNA.400-201ENST00000383963 111 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 SNORA20B-201ENST00000384220 132 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 MIR616-201ENST00000385293 97 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 RNU6-239P-201ENST00000390990 99 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 AC010154.1-201ENST00000425857 269 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 RPL30P4-201ENST00000429309 333 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 RPL36AP21-201ENST00000490372 323 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 RNA5SP217-201ENST00000515959 91 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 RNU1-41P-201ENST00000516161 162 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 RNU1-48P-201ENST00000516400 162 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 AL391903.3-201ENST00000612158 163 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 MIR5739-201ENST00000619803 80 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 AC006435.5-201ENST00000624486 112 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 AC103988.1-201ENST00000566382 2177 ntBASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CCDC87Q9NVE4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 SNORA27.1-201ENST00000362604 124 ntBASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 RNU6-376P-201ENST00000384731 106 ntBASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 AL355796.1-201ENST00000406706 323 ntBASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 AC016925.1-201ENST00000458303 298 ntBASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 AC080013.2-201ENST00000460866 323 ntBASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 RNU2-34P-201ENST00000516534 121 ntBASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 AL590808.1-201ENST00000618696 141 ntBASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 MIR7515-201ENST00000637837 67 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms