Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC093023.1-201ENST00000547375 507 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.45□□□□□ -2.18
DDX28Q9NUL7 MIR8081-201ENST00000611533 95 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 uc_338.5-201ENST00000611839 155 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 AL359075.3-201ENST00000613288 217 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 AC099654.5-201ENST00000636479 350 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 AC100821.1-201ENST00000523153 2479 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 RNY1P10-201ENST00000363268 113 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 RNU6-876P-201ENST00000391295 104 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 MIR1287-201ENST00000408492 90 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 COX6CP10-201ENST00000416832 224 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.44□□□□□ -2.18
DDX28Q9NUL7 SDAD1P3-201ENST00000427380 333 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 EIF1P2-201ENST00000428233 350 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 MTND4P18-201ENST00000447010 465 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 HSPE1P24-201ENST00000450782 238 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 RPL7P42-201ENST00000481005 679 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 AC023790.1-201ENST00000482174 347 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 RNU6-307P-201ENST00000516743 106 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.44□□□□□ -2.18
DDX28Q9NUL7 AL137100.2-201ENST00000555786 315 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.44□□□□□ -2.18
DDX28Q9NUL7 MIR4422-201ENST00000581938 83 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 AC022432.1-201ENST00000595739 310 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 PRR13P7-201ENST00000605538 430 ntBASIC1.44□□□□□ -2.18
DDX28Q9NUL7 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.44□□□□□ -2.18
DDX28Q9NUL7 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.67-201ENST00000362870 100 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.184-201ENST00000363884 108 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.404-201ENST00000383978 102 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 RNU6-331P-201ENST00000384724 107 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.43□□□□□ -2.18
DDX28Q9NUL7 UBE2V1P7-201ENST00000446395 340 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 RPS29P23-201ENST00000458635 123 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 RPL31P58-201ENST00000469001 379 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 HMGN1P12-201ENST00000499125 195 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.691-201ENST00000516611 103 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.43□□□□□ -2.18
DDX28Q9NUL7 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.43□□□□□ -2.18
DDX28Q9NUL7 AL160236.1-201ENST00000556317 195 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 SUB1P3-201ENST00000564581 315 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 FRG2DP-202ENST00000566967 323 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.43□□□□□ -2.18
DDX28Q9NUL7 U6.108-201ENST00000637764 58 ntBASIC1.43□□□□□ -2.18
DDX28Q9NUL7 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
DDX28Q9NUL7 RNU6-271P-201ENST00000363858 105 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 MIR329-1-201ENST00000385028 80 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 SNORA17.3-201ENST00000391159 129 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 SNORA75.4-201ENST00000391278 119 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 RN7SKP101-201ENST00000411376 320 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 AL161935.2-201ENST00000414627 60 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 TOMM22P2-201ENST00000430735 237 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 AL353997.1-201ENST00000432936 108 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 RNU7-87P-201ENST00000459343 62 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 TRMT112P2-201ENST00000512910 132 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 RNU6-107P-201ENST00000516643 102 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 AC091144.1-201ENST00000519573 138 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 APOOP3-201ENST00000536787 586 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 AL512598.1-201ENST00000610158 273 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 AC022306.2-201ENST00000617563 647 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 U6.73-201ENST00000619194 103 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 AC095038.3-201ENST00000634439 195 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.42□□□□□ -2.18
DDX28Q9NUL7 ICE2P2-201ENST00000483823 2787 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 AP000648.3-201ENST00000623539 4507 ntBASIC1.42□□□□□ -2.18
DDX28Q9NUL7 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
DDX28Q9NUL7 MTND5P10-201ENST00000603719 1809 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 SNORA4.2-201ENST00000365313 147 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 RNU6-1145P-201ENST00000384246 107 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 RNU6-950P-201ENST00000384651 107 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.557-201ENST00000384680 107 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 RPL30P13-201ENST00000418873 348 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 PDCL2P1-201ENST00000419302 352 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.41□□□□□ -2.18
DDX28Q9NUL7 RPS26P45-201ENST00000471748 340 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 AP003033.1-201ENST00000527244 415 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 MIR4709-201ENST00000577272 72 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 SNORD53B-201ENST00000577887 78 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 AC125232.2-201ENST00000592457 143 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 AC092794.2-201ENST00000620933 563 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 AC006435.5-201ENST00000624486 112 ntBASIC1.41□□□□□ -2.18
DDX28Q9NUL7 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.4□□□□□ -2.18
DDX28Q9NUL7 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
DDX28Q9NUL7 MIR302D-201ENST00000362275 68 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RNU6-874P-201ENST00000362390 105 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 SNORD1A-201ENST00000364968 72 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RNU6-203P-201ENST00000384038 104 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 MIR194-1-201ENST00000384892 85 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RNA5SP109-201ENST00000391010 116 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RPL21P1-201ENST00000399532 476 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RNU4-62P-201ENST00000410125 130 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RNU6-321P-201ENST00000410912 106 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RNU6-1001P-201ENST00000411265 100 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RPL23AP50-201ENST00000434149 455 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 AC245517.4-201ENST00000448601 281 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 Y_RNA.635-201ENST00000459041 101 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 SNORD65B-201ENST00000459126 73 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms