Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNY1P16-201ENST00000363063 111 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 SNORA75.4-201ENST00000391278 119 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 MIR320B2-201ENST00000408479 138 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 RNU6-1001P-201ENST00000411265 100 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 CST2P1-201ENST00000425770 87 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 AC073910.1-201ENST00000445047 438 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.38□□□□□ -2.19
VPS39Q96JC1 snoU13.27-201ENST00000459278 104 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 RNU7-87P-201ENST00000459343 62 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 HMGN1P12-201ENST00000499125 195 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 Y_RNA.708-201ENST00000516950 96 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 AC008269.2-201ENST00000561915 1105 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 MIR3124-201ENST00000582636 67 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 AL353149.1-201ENST00000610667 244 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 AL357075.2-201ENST00000614906 189 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 AL359697.1-201ENST00000624879 587 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 snoZ196.1-201ENST00000625269 89 ntBASIC1.38□□□□□ -2.19
VPS39Q96JC1 snoU2-30.2-201ENST00000362805 70 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 Y_RNA.179-201ENST00000363844 90 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 RNU6-793P-201ENST00000384233 104 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 Y_RNA.482-201ENST00000384377 111 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 Y_RNA.557-201ENST00000384680 107 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 MIR190B-201ENST00000401119 79 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 AC005002.2-201ENST00000438228 269 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 AL606517.2-201ENST00000442855 241 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.37□□□□□ -2.19
VPS39Q96JC1 AC114982.1-201ENST00000469402 321 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 Y_RNA.706-201ENST00000516933 99 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 AC019288.1-201ENST00000557918 224 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 AC125232.2-201ENST00000592457 143 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 7SK.7-201ENST00000603504 247 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 AC122108.2-201ENST00000611946 526 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 MIR1244-1-201ENST00000612829 85 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 MIR1244-3-201ENST00000635744 85 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 MIR1244-2-201ENST00000636449 85 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 MIR1244-4-202ENST00000636813 85 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 TPTEP1-208ENST00000636884 213 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 U6.108-201ENST00000637764 58 ntBASIC1.37□□□□□ -2.19
VPS39Q96JC1 RNA5SP361-201ENST00000362686 118 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 RNU6-457P-201ENST00000363999 107 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 RNA5SP99-201ENST00000364020 114 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 SNORA25.8-201ENST00000364831 128 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 RNU6-203P-201ENST00000384038 104 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 MIR758-201ENST00000390227 88 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 FGF7P8-201ENST00000402994 292 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 MIR1185-2-201ENST00000408687 86 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 AC138393.2-201ENST00000414742 246 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 USP9YP16-201ENST00000430287 407 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.36□□□□□ -2.19
VPS39Q96JC1 USP9YP23-201ENST00000455085 407 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 RNU6-221P-201ENST00000459541 99 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 RNU6-237P-201ENST00000515985 71 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 RNU6-1198P-201ENST00000516904 67 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 AC027419.1-201ENST00000522976 328 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 AC093023.1-201ENST00000547375 507 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 AC100812.1-201ENST00000607622 580 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 AC010999.1-201ENST00000611856 324 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 AC022306.2-201ENST00000617563 647 ntBASIC1.36□□□□□ -2.19
VPS39Q96JC1 Y_RNA.358-201ENST00000365491 99 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 RNU6-939P-201ENST00000384634 107 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 RNA5SP109-201ENST00000391010 116 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 Y_RNA.646-201ENST00000410980 101 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 COX6CP10-201ENST00000416832 224 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.35□□□□□ -2.19
VPS39Q96JC1 USMG5P1-201ENST00000425964 177 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 EIF1P2-201ENST00000428233 350 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 AC093303.1-201ENST00000514549 295 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 Y_RNA.691-201ENST00000516611 103 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 RNU6-107P-201ENST00000516643 102 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 AC105029.1-201ENST00000520250 669 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.35□□□□□ -2.19
VPS39Q96JC1 MIR4303-201ENST00000581299 66 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
VPS39Q96JC1 AL669831.3-213ENST00000636676 183 ntBASIC1.35□□□□□ -2.19
VPS39Q96JC1 RNU6-137P-201ENST00000363680 108 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 RNU6-280P-201ENST00000364145 104 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 RNU6-593P-201ENST00000364716 112 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 RNU6-99P-201ENST00000364721 107 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
VPS39Q96JC1 Y_RNA.474-201ENST00000384341 102 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 MIR194-1-201ENST00000384892 85 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 MIR329-1-201ENST00000385028 80 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 MIR618-201ENST00000385287 98 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 RNU1-139P-201ENST00000391307 165 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 MIR1253-201ENST00000408273 105 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 RNU6-370P-201ENST00000411008 104 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS39Q96JC1 AC092423.1-201ENST00000430165 186 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 RPL23AP50-201ENST00000434149 455 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.34□□□□□ -2.19
VPS39Q96JC1 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS39Q96JC1 AL163195.1-201ENST00000496941 348 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 RNU6-1114P-201ENST00000516022 107 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 SNORA20.3-201ENST00000516880 132 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 APOOP3-201ENST00000536787 586 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.34□□□□□ -2.19
VPS39Q96JC1 AC068338.1-201ENST00000565567 176 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms