Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 Y_RNA.199-201ENST00000364014 102 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 MIR562-201ENST00000384894 95 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 MIR520G-201ENST00000385064 90 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 RNA5SP467-201ENST00000391274 118 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 MTCO2P33-201ENST00000402100 465 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 RNU2-14P-201ENST00000411053 191 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 AL135786.1-201ENST00000415892 214 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 RNU7-141P-201ENST00000459304 62 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 RN7SL323P-201ENST00000494712 295 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 SNORD116-28-201ENST00000516123 91 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 SCARNA14-201ENST00000516903 136 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 MIR5692C2-201ENST00000577959 77 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 AP003357.1-201ENST00000604497 148 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 AL354798.1-201ENST00000622505 329 ntBASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.172-201ENST00000363765 102 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.262-201ENST00000364641 102 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.304-201ENST00000365011 112 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 RNA5SP283-201ENST00000365604 119 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 MIR524-201ENST00000385242 87 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 MIR1283-2-201ENST00000408621 87 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 RNA5SP511-201ENST00000410487 115 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 SUMO1P4-201ENST00000429430 302 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 RNU7-94P-201ENST00000459576 63 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 RNU7-115P-201ENST00000516433 55 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 RNU6-63P-201ENST00000516690 95 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 AC015720.1-201ENST00000565251 277 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 AC130289.1-201ENST00000577321 73 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 MIR3160-1-201ENST00000577972 85 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 MIR4529-201ENST00000578110 78 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 AC073413.2-201ENST00000604332 360 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 AL049779.4-201ENST00000604500 156 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 AC069114.2-201ENST00000604699 304 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 MIR6875-201ENST00000617506 72 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 FO624990.1-201ENST00000636373 85 ntBASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CLRN3Q8NCR9 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 RNU6-1205P-201ENST00000363625 106 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 RNU6-1048P-201ENST00000364054 107 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 SNORA3A-201ENST00000364113 130 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 RNU6-144P-201ENST00000383951 107 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 SNORA8-201ENST00000384574 139 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 SNORA57.1-201ENST00000391227 145 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.626-201ENST00000411288 95 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 RPS29P6-201ENST00000438196 145 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 U8.19-201ENST00000459095 133 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 RNU6-138P-201ENST00000515952 107 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 RNU1-104P-201ENST00000517280 175 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 MIR5685-201ENST00000579080 79 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 MIR5187-201ENST00000583479 76 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 POLR3GP1-201ENST00000594073 261 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 AC078899.2-201ENST00000595282 212 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 VN1R85P-201ENST00000601587 426 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 AC006023.1-201ENST00000603944 259 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 U4.6-201ENST00000621618 127 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 AC068724.3-201ENST00000625906 87 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.5□□□□□ -2.01
CLRN3Q8NCR9 MIR372-201ENST00000362225 67 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 MIR597-201ENST00000384968 97 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 HMGN2P3-201ENST00000433603 273 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 AC099677.2-201ENST00000436385 175 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 HMGN2P5-201ENST00000436882 273 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 AL138752.1-201ENST00000452964 351 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 RPS26P45-201ENST00000471748 340 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 RNU7-128P-201ENST00000517247 62 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 AC024405.2-202ENST00000532731 184 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 AC127455.1-201ENST00000565496 145 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 MIR4446-201ENST00000578505 67 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 Z83818.1-201ENST00000603584 150 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 AC011921.3-201ENST00000605540 361 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 AC245884.12-201ENST00000615364 59 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 ZNF271P-202ENST00000465539 1970 ntBASIC2.49□□□□□ -2.01
CLRN3Q8NCR9 AC134026.1-201ENST00000623249 2239 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 MIR411-201ENST00000362239 96 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 SNORD9-201ENST00000362566 104 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.293-201ENST00000364908 93 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 U8.7-201ENST00000364940 136 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.297-201ENST00000364950 91 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 DEFA7P-201ENST00000382676 285 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 RNU1-138P-201ENST00000384093 164 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 SNORA72-201ENST00000384339 132 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms