Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
UBE3DQ7Z6J8 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 AC110774.1-201ENST00000623567 2018 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 RNA5SP119-201ENST00000362715 117 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 RNU1-22P-201ENST00000363334 158 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 DYNLT3P1-201ENST00000378574 347 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-476P-201ENST00000384726 107 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 MIR449B-201ENST00000384995 97 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 RNU11-5P-201ENST00000391216 129 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 RPS12P18-201ENST00000442381 270 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 EEF1B2P7-201ENST00000451177 676 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 AC010401.1-201ENST00000463867 348 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 SCARNA3-201ENST00000517097 143 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 U6.95-201ENST00000636931 70 ntBASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
UBE3DQ7Z6J8 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AC017071.1-201ENST00000564407 2204 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 SNORA71.3-201ENST00000362582 128 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 Y_RNA.203-201ENST00000364106 102 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AC016909.1-201ENST00000415916 166 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 RPL23AP67-201ENST00000465341 474 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 SEM1P1-201ENST00000506694 209 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AC097462.1-201ENST00000514125 324 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-63P-201ENST00000516690 95 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 NDUFA5P6-201ENST00000542110 379 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 MIR4429-201ENST00000580105 73 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AC105245.1-201ENST00000581934 244 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AC023043.3-201ENST00000593113 385 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AL031274.2-201ENST00000599419 203 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AC107294.3-201ENST00000609211 526 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AC013412.1-201ENST00000610687 192 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 AC080128.1-201ENST00000474389 1917 ntBASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
UBE3DQ7Z6J8 RNU1-70P-201ENST00000362618 164 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 RNA5SP50-201ENST00000363731 107 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 RNU1-33P-201ENST00000364249 162 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 Y_RNA.280-201ENST00000364765 112 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-546P-201ENST00000383991 107 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-1144P-201ENST00000384247 104 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-136P-201ENST00000384663 107 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 MIR183-201ENST00000384958 110 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 MIR95-201ENST00000385072 81 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 AC093578.1-201ENST00000415219 368 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 AC245102.2-201ENST00000448956 180 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 CYP2C59P-201ENST00000457790 269 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 AC080013.2-201ENST00000460866 323 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 AC090515.1-201ENST00000465295 476 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 RPL21P129-201ENST00000491732 478 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 RPS29P21-201ENST00000496272 170 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 RNA5SP490-201ENST00000517141 136 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 AC027419.1-201ENST00000522976 328 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 AC131055.1-201ENST00000584626 316 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 MIR5739-201ENST00000619803 80 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 MIR3914-2-201ENST00000637339 95 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 U6.105-201ENST00000637379 88 ntBASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
UBE3DQ7Z6J8 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-1138P-201ENST00000365359 106 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 RNU6-418P-201ENST00000384035 107 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 RNU2-70P-201ENST00000410718 179 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 AL158823.1-201ENST00000418441 478 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 HMGN2P18-201ENST00000450680 270 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 AC006539.3-201ENST00000454258 129 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 RNU7-107P-201ENST00000459121 61 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 RPL27AP5-201ENST00000469428 449 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 RNA5SP76-201ENST00000516277 87 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 MIR1254-2-201ENST00000579553 63 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 MIR4438-201ENST00000585271 93 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 AL049861.1-201ENST00000603130 150 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 MIR8058-201ENST00000615737 89 ntBASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
UBE3DQ7Z6J8 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.15□□□□□ -1.9
UBE3DQ7Z6J8 Y_RNA.111-201ENST00000363248 100 ntBASIC3.15□□□□□ -1.91
UBE3DQ7Z6J8 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.15□□□□□ -1.91
UBE3DQ7Z6J8 SNORD11-201ENST00000459124 84 ntBASIC3.15□□□□□ -1.91
UBE3DQ7Z6J8 SNORA4.4-201ENST00000515921 135 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 185.9 ms