Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC013828.2-201ENST00000532487 235 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC-0.48□□□□□ -2.49
USF3Q68DE3 AC091178.2-201ENST00000584401 117 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 MTATP6P2-201ENST00000603319 678 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNU5A-6P-201ENST00000384136 116 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 MIR558-201ENST00000384920 94 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 ELOCP17-201ENST00000414751 326 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 MTND1P32-201ENST00000433043 938 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC108729.2-201ENST00000476543 840 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-0.49□□□□□ -2.49
USF3Q68DE3 RNU7-99P-201ENST00000516271 62 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC018448.1-201ENST00000552843 316 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC104072.1-201ENST00000568817 668 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 MIR548AC-201ENST00000585049 88 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC027279.3-201ENST00000625055 122 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 RNU2-39P-201ENST00000410604 198 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 RNU6-284P-201ENST00000411105 106 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 MTCO1P5-201ENST00000433573 344 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.49□□□□□ -2.49
USF3Q68DE3 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC-0.49□□□□□ -2.49
USF3Q68DE3 DEFB130C-202ENST00000530001 230 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC068587.4-201ENST00000533893 186 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC-0.49□□□□□ -2.49
USF3Q68DE3 RPL21P9-201ENST00000556149 474 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 MIR3681-201ENST00000580089 72 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 AC068792.1-201ENST00000621354 417 ntBASIC-0.49□□□□□ -2.49
USF3Q68DE3 RNU6-468P-201ENST00000384003 109 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AL663109.1-201ENST00000411498 844 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AC004866.1-201ENST00000411748 78 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 TRIM60P10Y-201ENST00000425589 751 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 MTND4P32-201ENST00000437189 1237 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 MTATP6P23-201ENST00000440153 476 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 RNU7-102P-201ENST00000458948 62 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 SNRPGP7-201ENST00000469016 106 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AP000870.1-201ENST00000472927 406 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AC097462.1-201ENST00000514125 324 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 RNU6-897P-201ENST00000517135 105 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 RNA5SP454-201ENST00000517231 127 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AC107934.1-201ENST00000522215 217 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC-0.5□□□□□ -2.49
USF3Q68DE3 LRRC34P1-201ENST00000542742 915 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 MIR5692A1-201ENST00000580523 69 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 MIR548AD-201ENST00000584780 82 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AC068790.2-201ENST00000602601 557 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 RBM11P1-201ENST00000604951 799 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 MIR4788-201ENST00000639104 80 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 RNU6-371P-201ENST00000364283 108 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 RNU6-692P-201ENST00000384496 107 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 PCNPP3-201ENST00000393579 471 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AL136310.1-201ENST00000404926 654 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC-0.5□□□□□ -2.49
USF3Q68DE3 MTND4LP7-201ENST00000431728 294 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AC091951.3-201ENST00000504093 246 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 RNU7-43P-201ENST00000516554 64 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AP002004.2-201ENST00000531656 154 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AC090897.1-201ENST00000580909 226 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 MIR4264-201ENST00000583520 66 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 AC138649.3-201ENST00000622154 254 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 ZNF204P-201ENST00000416749 2397 ntBASIC-0.5□□□□□ -2.49
USF3Q68DE3 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-0.51□□□□□ -2.49
USF3Q68DE3 AL355143.1-201ENST00000407101 841 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 USP9YP29-201ENST00000445112 563 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 RNU6-221P-201ENST00000459541 99 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 AC114755.3-201ENST00000481111 251 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 RNU7-51P-201ENST00000516560 62 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 AC103996.1-201ENST00000555468 102 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 AP002360.4-201ENST00000606980 481 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 uc_338.28-201ENST00000612082 187 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 AL162726.3-218ENST00000636401 95 ntBASIC-0.51□□□□□ -2.49
USF3Q68DE3 RNU6-560P-201ENST00000364007 108 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 SNORA75.1-201ENST00000391130 148 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 EXOSC3P1-201ENST00000448649 500 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 RNU7-182P-201ENST00000459009 62 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.52□□□□□ -2.49
USF3Q68DE3 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC-0.52□□□□□ -2.49
USF3Q68DE3 RNU7-128P-201ENST00000517247 62 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 MIR4263-201ENST00000584745 83 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 MIR4438-201ENST00000585271 93 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 SNORA1B-201ENST00000362535 133 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 SNORA67.2-201ENST00000384300 149 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 MIR208B-201ENST00000401172 77 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 CALM2P2-201ENST00000428512 440 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 MTND4P19-201ENST00000446659 478 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC-0.52□□□□□ -2.49
USF3Q68DE3 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 RNU2-10P-201ENST00000516375 211 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 RNU6-1291P-201ENST00000516591 104 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 RNU1-117P-201ENST00000517041 158 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC-0.52□□□□□ -2.49
USF3Q68DE3 AC100830.2-201ENST00000581636 240 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC-0.52□□□□□ -2.49
USF3Q68DE3 AC006504.8-201ENST00000621046 635 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 AC068137.4-201ENST00000638485 296 ntBASIC-0.52□□□□□ -2.49
USF3Q68DE3 RNU6-580P-201ENST00000365159 107 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 MIR586-201ENST00000385035 97 ntBASIC-0.53□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms