Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RN7SKP200-201ENST00000410564 320 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 AC245047.3-201ENST00000429428 127 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 AL589823.1-201ENST00000429577 183 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 USP9YP30-201ENST00000430729 455 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 MTND4LP16-201ENST00000440828 295 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 MTND4P18-201ENST00000447010 465 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 MTND1P17-201ENST00000448961 204 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 AC108729.3-201ENST00000513484 108 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 RNU7-99P-201ENST00000516271 62 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 MIR3664-201ENST00000579074 99 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 MIR5695-201ENST00000579717 85 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 AL391987.6-201ENST00000305671 199 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.295-201ENST00000364918 102 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 RNU6-1013P-201ENST00000384180 107 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.573-201ENST00000384763 105 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 RNU6-440P-201ENST00000390882 105 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 MRPL42P3-201ENST00000401492 326 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 RNA5SP118-201ENST00000410385 109 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 AL591704.2-201ENST00000421658 181 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 MTND3P23-201ENST00000431980 347 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 RPS29P25-201ENST00000481709 171 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 AL163540.1-201ENST00000485382 386 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 RNU6-566P-201ENST00000516790 107 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 RNU1-54P-201ENST00000517181 120 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 AC091144.1-201ENST00000519573 138 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 AC004584.2-201ENST00000570407 410 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 snoU13.31-201ENST00000607291 104 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 AC010999.1-201ENST00000611856 324 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 MIR8065-201ENST00000620577 100 ntBASIC1.26□□□□□ -2.21
CCDC40Q4G0X9 RNU6-842P-201ENST00000384269 107 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.490-201ENST00000384413 102 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 SNORA12.1-201ENST00000390873 148 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 RPL37P10-201ENST00000412884 288 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 RPL23AP36-201ENST00000413895 458 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 USMG5P1-201ENST00000425964 177 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 SNORD65B-201ENST00000459126 73 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 AL133373.1-201ENST00000497098 94 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 AC093852.1-201ENST00000503587 266 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 RN7SKP88-201ENST00000516847 250 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 APOOP3-201ENST00000536787 586 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 BNIP3P10-201ENST00000605360 577 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 7SK.8-201ENST00000612110 250 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 7SK.11-201ENST00000615477 250 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 MIR6128-201ENST00000615528 109 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 7SK.13-201ENST00000622040 250 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 MIR3662-201ENST00000637030 95 ntBASIC1.25□□□□□ -2.21
CCDC40Q4G0X9 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 RNU6-222P-201ENST00000362438 107 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.48-201ENST00000362710 103 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.184-201ENST00000363884 108 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.301-201ENST00000364990 103 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.318-201ENST00000365131 97 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.516-201ENST00000384541 124 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 PGBD4P5-201ENST00000445958 426 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 OR2A41P-201ENST00000473586 105 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 RNU6-1114P-201ENST00000516022 107 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 AC027419.1-201ENST00000522976 328 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 MIR4438-201ENST00000585271 93 ntBASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
CCDC40Q4G0X9 RNU6-281P-201ENST00000384212 103 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 RNU1-139P-201ENST00000391307 165 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 SNORD5.1-201ENST00000458800 75 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 RNU7-40P-201ENST00000516397 64 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.683-201ENST00000516508 93 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 RNU6-107P-201ENST00000516643 102 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.706-201ENST00000516933 99 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 AL021879.1-201ENST00000611756 288 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 U4.5-201ENST00000617137 123 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 AC099654.5-201ENST00000636479 350 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 AC068137.4-201ENST00000638485 296 ntBASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.23□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.453-201ENST00000384223 109 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 AL034345.1-201ENST00000407768 123 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 USP9YP16-201ENST00000430287 407 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 MRPS10P1-201ENST00000448483 130 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 USP9YP23-201ENST00000455085 407 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 RPL39P38-201ENST00000467018 153 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 RPS27P22-201ENST00000478056 241 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 RNU4-49P-201ENST00000516080 140 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 CBX3P8-201ENST00000532412 525 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 AC023157.2-201ENST00000540596 141 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 MIR4498-201ENST00000577599 66 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 MIR4790-201ENST00000577799 79 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 AC100812.1-201ENST00000607622 580 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 MIR6078-201ENST00000611069 100 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms