Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.61□□□□□ -2.31
ZNF404Q494X3 RPS3AP1-201ENST00000413190 320 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 MTND2P9-201ENST00000422293 931 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 AL445305.1-201ENST00000432577 575 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 MRPS10P1-201ENST00000448483 130 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.61□□□□□ -2.31
ZNF404Q494X3 TPT1P7-201ENST00000458300 517 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 RNU7-187P-201ENST00000458985 68 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 RNU6-917P-201ENST00000516294 104 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 Y_RNA.717-201ENST00000517106 92 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 AC007834.2-201ENST00000536310 343 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.61□□□□□ -2.31
ZNF404Q494X3 AL357312.1-201ENST00000603879 298 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 AC121247.2-201ENST00000604776 136 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 MIR6835-201ENST00000621552 64 ntBASIC0.61□□□□□ -2.31
ZNF404Q494X3 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.61□□□□□ -2.31
ZNF404Q494X3 RNU6-969P-201ENST00000383900 105 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 MIR608-201ENST00000384820 100 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 CALM2P3-201ENST00000400429 449 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 MIR942-201ENST00000401111 86 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC092447.3-201ENST00000426027 686 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 CALM2P4-201ENST00000430810 426 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC091179.3-201ENST00000474761 144 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 TRBVA-201ENST00000498804 316 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.6□□□□□ -2.31
ZNF404Q494X3 RNA5SP220-201ENST00000516298 104 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 RNU6-1223P-201ENST00000517124 104 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC027419.1-201ENST00000522976 328 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC023157.2-201ENST00000540596 141 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC011604.1-201ENST00000545978 196 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC027288.2-201ENST00000553028 243 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.6□□□□□ -2.31
ZNF404Q494X3 AC097520.1-201ENST00000624435 385 ntBASIC0.6□□□□□ -2.31
ZNF404Q494X3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
ZNF404Q494X3 Y_RNA.265-201ENST00000364677 108 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 SNORA2.2-201ENST00000365473 135 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 RNU6-128P-201ENST00000383976 107 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 RNU6-793P-201ENST00000384233 104 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 RNU6-17P-201ENST00000384245 107 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 RNU6-424P-201ENST00000384367 105 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 RNY1P14-201ENST00000384426 108 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 RNU6-18P-201ENST00000384527 107 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 RNU6-541P-201ENST00000384709 110 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.59□□□□□ -2.31
ZNF404Q494X3 RPS27P22-201ENST00000478056 241 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 AC083904.1-201ENST00000487828 231 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 MTCO2P30-201ENST00000503662 364 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.59□□□□□ -2.31
ZNF404Q494X3 AC136628.3-201ENST00000521868 290 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.59□□□□□ -2.31
ZNF404Q494X3 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.59□□□□□ -2.31
ZNF404Q494X3 AC133485.1-201ENST00000567176 124 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 AC138907.6-201ENST00000568401 126 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 AC006435.5-201ENST00000624486 112 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 MIR6079-201ENST00000635807 62 ntBASIC0.59□□□□□ -2.31
ZNF404Q494X3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
ZNF404Q494X3 Y_RNA.100-201ENST00000363141 102 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 RNU6-137P-201ENST00000363680 108 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 RNU5F-3P-201ENST00000363767 117 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 RNU6-280P-201ENST00000364145 104 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 Y_RNA.231-201ENST00000364358 102 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 RNU6-522P-201ENST00000364497 107 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 Y_RNA.409-201ENST00000383990 98 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 Y_RNA.582-201ENST00000391023 95 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 U8.16-201ENST00000391279 133 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 MTND4P18-201ENST00000447010 465 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 PCMTD1P1-201ENST00000455560 355 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 SNORD65B-201ENST00000459126 73 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 AC117454.1-201ENST00000491120 168 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 AC022493.2-201ENST00000506122 481 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 RNU2-56P-201ENST00000516826 190 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 DEFB108E-201ENST00000524692 240 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.58□□□□□ -2.32
ZNF404Q494X3 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.58□□□□□ -2.32
ZNF404Q494X3 SNORA4-201ENST00000584302 138 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 POLR3GP2-201ENST00000588366 668 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 AL158209.2-201ENST00000619266 216 ntBASIC0.58□□□□□ -2.32
ZNF404Q494X3 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.58□□□□□ -2.32
ZNF404Q494X3 Y_RNA.151-201ENST00000363566 112 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 Y_RNA.184-201ENST00000363884 108 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
ZNF404Q494X3 Y_RNA.481-201ENST00000384373 102 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 MIR508-201ENST00000384857 115 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 RNU6-648P-201ENST00000410190 107 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.57□□□□□ -2.32
ZNF404Q494X3 RPL30P16-201ENST00000419341 429 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 NDUFA5P4-201ENST00000436704 385 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.57□□□□□ -2.32
ZNF404Q494X3 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.57□□□□□ -2.32
ZNF404Q494X3 AC093850.1-201ENST00000454121 251 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 RPS26P48-201ENST00000491713 339 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 AC010469.2-201ENST00000496412 480 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.57□□□□□ -2.32
ZNF404Q494X3 Y_RNA.673-201ENST00000516306 88 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 RNU6-835P-201ENST00000516974 104 ntBASIC0.57□□□□□ -2.32
ZNF404Q494X3 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 140 ms