Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RNU6-948P-201ENST00000516374 107 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 RNA5SP490-201ENST00000517141 136 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 RN7SKP40-201ENST00000517211 242 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 AC027419.1-201ENST00000522976 328 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
HOXA4Q00056 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXA4Q00056 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXA4Q00056 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXA4Q00056 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXA4Q00056 MIR3117-201ENST00000584034 78 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 AL355297.2-201ENST00000604792 129 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 AC025754.2-201ENST00000606491 432 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 AC013412.1-201ENST00000610687 192 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
HOXA4Q00056 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.36□□□□□ -2.03
HOXA4Q00056 Y_RNA.310-201ENST00000365063 113 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 Y_RNA.341-201ENST00000365341 102 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 MIR512-1-201ENST00000384913 84 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 MTCO2P33-201ENST00000402100 465 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 RNU6-710P-201ENST00000410424 105 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 COTL1P1-201ENST00000422309 375 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 AC114982.1-201ENST00000469402 321 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 AL049873.1-201ENST00000480540 376 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXA4Q00056 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.36□□□□□ -2.03
HOXA4Q00056 MIR3133-201ENST00000583157 78 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 MIR4506-201ENST00000584693 77 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 AC072026.1-201ENST00000605023 201 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 AC093732.2-201ENST00000607950 274 ntBASIC2.36□□□□□ -2.03
HOXA4Q00056 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
HOXA4Q00056 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
HOXA4Q00056 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXA4Q00056 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.36□□□□□ -2.03
HOXA4Q00056 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
HOXA4Q00056 Y_RNA.368-201ENST00000365547 113 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 DYNLT3P1-201ENST00000378574 347 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 RNU6-125P-201ENST00000384505 107 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 AC104332.1-201ENST00000440471 797 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 AC074290.1-201ENST00000448883 135 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXA4Q00056 RNU6-991P-201ENST00000516168 107 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 AC025647.1-201ENST00000517879 253 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 AP005660.1-201ENST00000522972 293 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 LARP7P3-201ENST00000579888 337 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 AC090616.3-201ENST00000582184 217 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 AL356280.1-201ENST00000603614 379 ntBASIC2.35□□□□□ -2.03
HOXA4Q00056 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
HOXA4Q00056 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
HOXA4Q00056 Y_RNA.233-201ENST00000364407 101 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 RNA5SP125-201ENST00000364843 120 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 RNA5SP240-201ENST00000365355 128 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 SNORA72.4-201ENST00000384174 132 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 NDUFB4P4-201ENST00000404822 243 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 RNU2-63P-201ENST00000410792 194 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 AC003685.2-201ENST00000422795 395 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXA4Q00056 AC107083.1-201ENST00000439643 279 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 AC108938.1-201ENST00000451204 136 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 AC018868.1-201ENST00000491307 315 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 AC093259.1-201ENST00000509755 300 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 SCARNA13-201ENST00000516672 275 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 SNORA48.11-201ENST00000517015 89 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXA4Q00056 MIR5692C2-201ENST00000577959 77 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 AL078604.3-201ENST00000615580 211 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 AC013791.1-201ENST00000616619 62 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 AC021753.1-201ENST00000635724 168 ntBASIC2.34□□□□□ -2.03
HOXA4Q00056 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
HOXA4Q00056 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.34□□□□□ -2.04
HOXA4Q00056 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXA4Q00056 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
HOXA4Q00056 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXA4Q00056 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXA4Q00056 SNORA27.1-201ENST00000362604 124 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 RNU6-525P-201ENST00000363685 104 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 RNU4-10P-201ENST00000364383 140 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 Y_RNA.287-201ENST00000364853 94 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 Y_RNA.456-201ENST00000384232 111 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 RNU6-1235P-201ENST00000384559 107 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 MIR561-201ENST00000385216 97 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 MIR873-201ENST00000401120 77 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 AL357139.1-201ENST00000407792 426 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 RNU2-52P-201ENST00000410680 190 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 AC016909.1-201ENST00000415916 166 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXA4Q00056 AC087499.2-201ENST00000432861 149 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 MTCO1P44-201ENST00000441935 243 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 RPL23AP7-203ENST00000449021 469 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 RNU6-498P-201ENST00000459468 107 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 AC010531.2-201ENST00000465012 153 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 AC006483.1-201ENST00000487308 313 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXA4Q00056 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXA4Q00056 AC010598.1-201ENST00000510378 103 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 RNA5SP385-201ENST00000515947 110 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 SNORA70.12-201ENST00000516084 153 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 RNU6-1337P-201ENST00000516525 95 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 MTND5P41-201ENST00000517498 206 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 SUMO2P18-201ENST00000518873 252 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms