Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 MIR208B-201ENST00000401172 77 ntBASIC1.88□□□□□ -2.11
LMO4P61968 Y_RNA.595-201ENST00000410403 105 ntBASIC1.88□□□□□ -2.11
LMO4P61968 RNU6-651P-201ENST00000411040 105 ntBASIC1.88□□□□□ -2.11
LMO4P61968 RNU4-61P-201ENST00000411243 107 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AL161788.1-201ENST00000441805 169 ntBASIC1.88□□□□□ -2.11
LMO4P61968 MRPS10P1-201ENST00000448483 130 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AL138752.1-201ENST00000452964 351 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AC090515.1-201ENST00000465295 476 ntBASIC1.88□□□□□ -2.11
LMO4P61968 RPS27AP9-201ENST00000477681 438 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AC091959.1-201ENST00000495857 238 ntBASIC1.88□□□□□ -2.11
LMO4P61968 SNORD116-28-201ENST00000516123 91 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.88□□□□□ -2.11
LMO4P61968 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.88□□□□□ -2.11
LMO4P61968 CBX3P4-201ENST00000538909 354 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AC233702.2-202ENST00000562547 291 ntBASIC1.88□□□□□ -2.11
LMO4P61968 MIR3136-201ENST00000583498 78 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AC008749.1-201ENST00000597650 306 ntBASIC1.88□□□□□ -2.11
LMO4P61968 RPL30P11-203ENST00000598995 310 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AL670379.2-201ENST00000604983 252 ntBASIC1.88□□□□□ -2.11
LMO4P61968 AC005520.5-201ENST00000613926 164 ntBASIC1.88□□□□□ -2.11
LMO4P61968 MIR6873-201ENST00000622788 63 ntBASIC1.88□□□□□ -2.11
LMO4P61968 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMO4P61968 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMO4P61968 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
LMO4P61968 MIR410-201ENST00000362222 80 ntBASIC1.87□□□□□ -2.11
LMO4P61968 RNU1-72P-201ENST00000362976 153 ntBASIC1.87□□□□□ -2.11
LMO4P61968 RNU6-727P-201ENST00000363592 107 ntBASIC1.87□□□□□ -2.11
LMO4P61968 Y_RNA.179-201ENST00000363844 90 ntBASIC1.87□□□□□ -2.11
LMO4P61968 Y_RNA.180-201ENST00000363867 113 ntBASIC1.87□□□□□ -2.11
LMO4P61968 Y_RNA.275-201ENST00000364726 110 ntBASIC1.87□□□□□ -2.11
LMO4P61968 SNORA67.1-201ENST00000364749 141 ntBASIC1.87□□□□□ -2.11
LMO4P61968 Y_RNA.331-201ENST00000365267 102 ntBASIC1.87□□□□□ -2.11
LMO4P61968 RNU6-793P-201ENST00000384233 104 ntBASIC1.87□□□□□ -2.11
LMO4P61968 RNU6-886P-201ENST00000384319 105 ntBASIC1.87□□□□□ -2.11
LMO4P61968 RNU6-378P-201ENST00000384324 107 ntBASIC1.87□□□□□ -2.11
LMO4P61968 MIR221-201ENST00000385135 110 ntBASIC1.87□□□□□ -2.11
LMO4P61968 MIR524-201ENST00000385242 87 ntBASIC1.87□□□□□ -2.11
LMO4P61968 PCNPP3-201ENST00000393579 471 ntBASIC1.87□□□□□ -2.11
LMO4P61968 CBX3P9-201ENST00000402326 552 ntBASIC1.87□□□□□ -2.11
LMO4P61968 RNA5SP201-201ENST00000410316 124 ntBASIC1.87□□□□□ -2.11
LMO4P61968 Y_RNA.793-201ENST00000411222 111 ntBASIC1.87□□□□□ -2.11
LMO4P61968 AL390729.2-201ENST00000416137 156 ntBASIC1.87□□□□□ -2.11
LMO4P61968 AIMP1P2-201ENST00000425294 312 ntBASIC1.87□□□□□ -2.11
LMO4P61968 MTCO1P5-201ENST00000433573 344 ntBASIC1.87□□□□□ -2.11
LMO4P61968 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.87□□□□□ -2.11
LMO4P61968 UQCRBP2-201ENST00000447827 297 ntBASIC1.87□□□□□ -2.11
LMO4P61968 Y_RNA.644-201ENST00000459006 113 ntBASIC1.87□□□□□ -2.11
LMO4P61968 snoU13.14-201ENST00000459372 104 ntBASIC1.87□□□□□ -2.11
LMO4P61968 RNU6-625P-201ENST00000459412 107 ntBASIC1.87□□□□□ -2.11
LMO4P61968 UBL5P3-201ENST00000475112 231 ntBASIC1.87□□□□□ -2.11
LMO4P61968 Y_RNA.674-201ENST00000516362 113 ntBASIC1.87□□□□□ -2.11
LMO4P61968 AC018448.1-201ENST00000552843 316 ntBASIC1.87□□□□□ -2.11
LMO4P61968 RPL21P9-201ENST00000556149 474 ntBASIC1.87□□□□□ -2.11
LMO4P61968 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.87□□□□□ -2.11
LMO4P61968 AL162424.1-201ENST00000602325 221 ntBASIC1.87□□□□□ -2.11
LMO4P61968 AL713866.2-201ENST00000603579 219 ntBASIC1.87□□□□□ -2.11
LMO4P61968 AC037487.3-201ENST00000606668 112 ntBASIC1.87□□□□□ -2.11
LMO4P61968 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.87□□□□□ -2.11
LMO4P61968 AL590240.4-201ENST00000616908 390 ntBASIC1.87□□□□□ -2.11
LMO4P61968 MIR6766-201ENST00000622641 72 ntBASIC1.87□□□□□ -2.11
LMO4P61968 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
LMO4P61968 RNU6-655P-201ENST00000362858 107 ntBASIC1.86□□□□□ -2.11
LMO4P61968 Y_RNA.101-201ENST00000363154 102 ntBASIC1.86□□□□□ -2.11
LMO4P61968 Y_RNA.136-201ENST00000363444 102 ntBASIC1.86□□□□□ -2.11
LMO4P61968 RNU5F-3P-201ENST00000363767 117 ntBASIC1.86□□□□□ -2.11
LMO4P61968 Y_RNA.270-201ENST00000364693 104 ntBASIC1.86□□□□□ -2.11
LMO4P61968 RNU4-56P-201ENST00000364700 142 ntBASIC1.86□□□□□ -2.11
LMO4P61968 RNY4P28-201ENST00000365281 93 ntBASIC1.86□□□□□ -2.11
LMO4P61968 Y_RNA.383-201ENST00000383855 97 ntBASIC1.86□□□□□ -2.11
LMO4P61968 RNU6-245P-201ENST00000384020 107 ntBASIC1.86□□□□□ -2.11
LMO4P61968 RNU6-514P-201ENST00000384208 107 ntBASIC1.86□□□□□ -2.11
LMO4P61968 Y_RNA.626-201ENST00000411288 95 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AC004866.1-201ENST00000411748 78 ntBASIC1.86□□□□□ -2.11
LMO4P61968 ELOCP21-201ENST00000412558 336 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.86□□□□□ -2.11
LMO4P61968 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.86□□□□□ -2.11
LMO4P61968 RAB28P5-201ENST00000427490 651 ntBASIC1.86□□□□□ -2.11
LMO4P61968 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.86□□□□□ -2.11
LMO4P61968 POLR2KP2-201ENST00000438155 177 ntBASIC1.86□□□□□ -2.11
LMO4P61968 IFNA11P-201ENST00000446352 526 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AC074133.1-201ENST00000515696 183 ntBASIC1.86□□□□□ -2.11
LMO4P61968 RNU6-826P-201ENST00000516827 104 ntBASIC1.86□□□□□ -2.11
LMO4P61968 DEFB131C-201ENST00000528817 165 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AC024405.2-202ENST00000532731 184 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AP002001.1-203ENST00000534002 267 ntBASIC1.86□□□□□ -2.11
LMO4P61968 MIR3923-201ENST00000579521 83 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AL356575.1-201ENST00000603008 283 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AC011921.3-201ENST00000605540 361 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AC022441.3-201ENST00000605737 136 ntBASIC1.86□□□□□ -2.11
LMO4P61968 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.86□□□□□ -2.11
LMO4P61968 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AC006001.4-201ENST00000622243 395 ntBASIC1.86□□□□□ -2.11
LMO4P61968 AC090517.3-201ENST00000625170 141 ntBASIC1.86□□□□□ -2.11
LMO4P61968 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
LMO4P61968 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
LMO4P61968 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
LMO4P61968 AP006437.1-201ENST00000641440 3685 ntBASIC1.85□□□□□ -2.11
LMO4P61968 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
LMO4P61968 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
LMO4P61968 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms