Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.1□□□□□ -1.91
MRE11P49959 AP002001.1-203ENST00000534002 267 ntBASIC3.1□□□□□ -1.91
MRE11P49959 AL049779.4-201ENST00000604500 156 ntBASIC3.1□□□□□ -1.91
MRE11P49959 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.1□□□□□ -1.91
MRE11P49959 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.09□□□□□ -1.91
MRE11P49959 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
MRE11P49959 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
MRE11P49959 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
MRE11P49959 RNU4-15P-201ENST00000362613 141 ntBASIC3.09□□□□□ -1.91
MRE11P49959 RNU6-774P-201ENST00000363238 107 ntBASIC3.09□□□□□ -1.91
MRE11P49959 Y_RNA.217-201ENST00000364214 105 ntBASIC3.09□□□□□ -1.91
MRE11P49959 RNU6-746P-201ENST00000384112 109 ntBASIC3.09□□□□□ -1.91
MRE11P49959 RNU6-662P-201ENST00000384253 104 ntBASIC3.09□□□□□ -1.91
MRE11P49959 MIR186-201ENST00000384988 86 ntBASIC3.09□□□□□ -1.91
MRE11P49959 RPS12P2-201ENST00000439728 269 ntBASIC3.09□□□□□ -1.91
MRE11P49959 Y_RNA.641-201ENST00000459414 105 ntBASIC3.09□□□□□ -1.91
MRE11P49959 AP001324.2-201ENST00000461163 319 ntBASIC3.09□□□□□ -1.91
MRE11P49959 RNU6-255P-201ENST00000516957 105 ntBASIC3.09□□□□□ -1.91
MRE11P49959 AC022559.1-201ENST00000520905 205 ntBASIC3.09□□□□□ -1.91
MRE11P49959 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.09□□□□□ -1.91
MRE11P49959 AC025281.1-201ENST00000567026 265 ntBASIC3.09□□□□□ -1.91
MRE11P49959 FO624990.1-201ENST00000636373 85 ntBASIC3.09□□□□□ -1.91
MRE11P49959 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.09□□□□□ -1.91
MRE11P49959 RNU4-80P-201ENST00000363200 141 ntBASIC3.08□□□□□ -1.92
MRE11P49959 Y_RNA.415-201ENST00000384012 112 ntBASIC3.08□□□□□ -1.92
MRE11P49959 RNU6-1310P-201ENST00000384153 107 ntBASIC3.08□□□□□ -1.92
MRE11P49959 RNA5SP210-201ENST00000391034 120 ntBASIC3.08□□□□□ -1.92
MRE11P49959 RNU6-493P-201ENST00000391321 108 ntBASIC3.08□□□□□ -1.92
MRE11P49959 RNU2-54P-201ENST00000410299 190 ntBASIC3.08□□□□□ -1.92
MRE11P49959 AC004866.1-201ENST00000411748 78 ntBASIC3.08□□□□□ -1.92
MRE11P49959 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.08□□□□□ -1.92
MRE11P49959 AC087499.2-201ENST00000432861 149 ntBASIC3.08□□□□□ -1.92
MRE11P49959 AL392103.1-201ENST00000447000 198 ntBASIC3.08□□□□□ -1.92
MRE11P49959 RPL31P41-201ENST00000477967 372 ntBASIC3.08□□□□□ -1.92
MRE11P49959 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.08□□□□□ -1.92
MRE11P49959 RNU6-191P-201ENST00000516295 94 ntBASIC3.08□□□□□ -1.92
MRE11P49959 RNU6-155P-201ENST00000516347 100 ntBASIC3.08□□□□□ -1.92
MRE11P49959 EIF4A1P12-201ENST00000551910 141 ntBASIC3.08□□□□□ -1.92
MRE11P49959 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.08□□□□□ -1.92
MRE11P49959 MIR3145-201ENST00000580727 82 ntBASIC3.08□□□□□ -1.92
MRE11P49959 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.08□□□□□ -1.92
MRE11P49959 AC072026.1-201ENST00000605023 201 ntBASIC3.08□□□□□ -1.92
MRE11P49959 AC005828.6-201ENST00000606610 232 ntBASIC3.08□□□□□ -1.92
MRE11P49959 AC073349.3-201ENST00000617616 186 ntBASIC3.08□□□□□ -1.92
MRE11P49959 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.08□□□□□ -1.92
MRE11P49959 MIR3674-201ENST00000636576 68 ntBASIC3.08□□□□□ -1.92
MRE11P49959 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.08□□□□□ -1.92
MRE11P49959 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
MRE11P49959 Y_RNA.597-201ENST00000410463 100 ntBASIC3.07□□□□□ -1.92
MRE11P49959 AC074198.2-201ENST00000508153 258 ntBASIC3.07□□□□□ -1.92
MRE11P49959 DEFB131C-201ENST00000528817 165 ntBASIC3.07□□□□□ -1.92
MRE11P49959 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.07□□□□□ -1.92
MRE11P49959 MIR3616-201ENST00000584070 92 ntBASIC3.07□□□□□ -1.92
MRE11P49959 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.07□□□□□ -1.92
MRE11P49959 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
MRE11P49959 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.06□□□□□ -1.92
MRE11P49959 RNU6-655P-201ENST00000362858 107 ntBASIC3.06□□□□□ -1.92
MRE11P49959 RNU6-1210P-201ENST00000363775 107 ntBASIC3.06□□□□□ -1.92
MRE11P49959 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
MRE11P49959 RNU6-918P-201ENST00000391219 106 ntBASIC3.06□□□□□ -1.92
MRE11P49959 AC009963.1-201ENST00000417265 157 ntBASIC3.06□□□□□ -1.92
MRE11P49959 AC027124.2-201ENST00000428249 105 ntBASIC3.06□□□□□ -1.92
MRE11P49959 RPS3P1-201ENST00000456781 192 ntBASIC3.06□□□□□ -1.92
MRE11P49959 AC112771.1-201ENST00000463581 102 ntBASIC3.06□□□□□ -1.92
MRE11P49959 AC145146.1-201ENST00000496370 254 ntBASIC3.06□□□□□ -1.92
MRE11P49959 RPPH1-2P-201ENST00000516688 293 ntBASIC3.06□□□□□ -1.92
MRE11P49959 RNU6-789P-201ENST00000517105 102 ntBASIC3.06□□□□□ -1.92
MRE11P49959 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.06□□□□□ -1.92
MRE11P49959 AC103810.1-201ENST00000579873 453 ntBASIC3.06□□□□□ -1.92
MRE11P49959 AC005562.2-201ENST00000618264 111 ntBASIC3.06□□□□□ -1.92
MRE11P49959 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
MRE11P49959 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.06□□□□□ -1.92
MRE11P49959 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
MRE11P49959 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
MRE11P49959 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
MRE11P49959 U3.9-201ENST00000363823 204 ntBASIC3.05□□□□□ -1.92
MRE11P49959 RNU6-923P-201ENST00000364753 107 ntBASIC3.05□□□□□ -1.92
MRE11P49959 RNU1-138P-201ENST00000384093 164 ntBASIC3.05□□□□□ -1.92
MRE11P49959 RNU1-57P-201ENST00000384491 166 ntBASIC3.05□□□□□ -1.92
MRE11P49959 SNORA67.4-201ENST00000384688 142 ntBASIC3.05□□□□□ -1.92
MRE11P49959 SNORA80E-201ENST00000384744 137 ntBASIC3.05□□□□□ -1.92
MRE11P49959 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.05□□□□□ -1.92
MRE11P49959 RNA5SP475-201ENST00000410568 110 ntBASIC3.05□□□□□ -1.92
MRE11P49959 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.05□□□□□ -1.92
MRE11P49959 AC004386.2-201ENST00000441858 148 ntBASIC3.05□□□□□ -1.92
MRE11P49959 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.05□□□□□ -1.92
MRE11P49959 SCGB1D5P-201ENST00000515134 247 ntBASIC3.05□□□□□ -1.92
MRE11P49959 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.05□□□□□ -1.92
MRE11P49959 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.05□□□□□ -1.92
MRE11P49959 RNU6-344P-201ENST00000516635 111 ntBASIC3.05□□□□□ -1.92
MRE11P49959 AC079598.5-201ENST00000547460 117 ntBASIC3.05□□□□□ -1.92
MRE11P49959 AC027176.1-201ENST00000560204 514 ntBASIC3.05□□□□□ -1.92
MRE11P49959 MIR4781-201ENST00000585250 76 ntBASIC3.05□□□□□ -1.92
MRE11P49959 DEFB117-201ENST00000602356 141 ntBASIC3.05□□□□□ -1.92
MRE11P49959 TCL6_2.1-201ENST00000615162 119 ntBASIC3.05□□□□□ -1.92
MRE11P49959 AL449363.1-201ENST00000617815 186 ntBASIC3.05□□□□□ -1.92
MRE11P49959 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
MRE11P49959 AC080100.1-201ENST00000624239 5356 ntBASIC3.04□□□□□ -1.92
MRE11P49959 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
MRE11P49959 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms