Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC138393.2-201ENST00000414742 246 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RPL30P16-201ENST00000419341 429 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 USP9YP30-201ENST00000430729 455 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.86□□□□□ -2.27
COL5A3P25940 RNU7-14P-201ENST00000459331 62 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC130509.1-201ENST00000464158 433 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 HMGN1P12-201ENST00000499125 195 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 ACA59.1-201ENST00000515966 143 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6-567P-201ENST00000516746 107 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
COL5A3P25940 MIR5006-201ENST00000583027 110 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 Z98751.3-201ENST00000604447 521 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC124303.1-201ENST00000605703 360 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.86□□□□□ -2.27
COL5A3P25940 SNORA43.4-201ENST00000629559 138 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
COL5A3P25940 RNU5B-2P-201ENST00000363036 113 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 U3.9-201ENST00000363823 204 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 RNA5SP493-201ENST00000364115 91 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 Y_RNA.332-201ENST00000365271 113 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 RNU6-1274P-201ENST00000384557 107 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 Y_RNA.533-201ENST00000384596 114 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 MIR618-201ENST00000385287 98 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
COL5A3P25940 SNORA12.2-201ENST00000391040 156 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 AC009310.1-201ENST00000414414 451 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 AC139712.2-201ENST00000424302 339 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.85□□□□□ -2.27
COL5A3P25940 MTND1P4-201ENST00000435196 415 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 MTATP6P13-201ENST00000438531 667 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.85□□□□□ -2.27
COL5A3P25940 AC007215.1-201ENST00000464893 276 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 AC116353.2-201ENST00000505332 712 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.85□□□□□ -2.27
COL5A3P25940 SNORA25.14-201ENST00000516481 132 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.85□□□□□ -2.27
COL5A3P25940 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.85□□□□□ -2.27
COL5A3P25940 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.85□□□□□ -2.27
COL5A3P25940 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.85□□□□□ -2.27
COL5A3P25940 AC146944.4-201ENST00000602697 718 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.85□□□□□ -2.27
COL5A3P25940 AP000654.2-201ENST00000605633 586 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 AL136221.1-201ENST00000621449 509 ntBASIC0.85□□□□□ -2.27
COL5A3P25940 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.84□□□□□ -2.27
COL5A3P25940 Y_RNA.86-201ENST00000363020 111 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 SNORA25.8-201ENST00000364831 128 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 RNU6-842P-201ENST00000384269 107 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 SNORA26.3-201ENST00000391119 136 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 RNU6-1156P-201ENST00000410365 100 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 AC009161.1-201ENST00000417306 376 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.84□□□□□ -2.27
COL5A3P25940 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.84□□□□□ -2.27
COL5A3P25940 AC112492.4-201ENST00000456549 352 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.84□□□□□ -2.27
COL5A3P25940 HSPE1P19-201ENST00000603327 295 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 MIR8074-201ENST00000615081 81 ntBASIC0.84□□□□□ -2.27
COL5A3P25940 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
COL5A3P25940 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
COL5A3P25940 MIR26B-201ENST00000362251 77 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 SNORD50.1-201ENST00000362987 71 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 Y_RNA.248-201ENST00000364501 109 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 RNU6-596P-201ENST00000365395 98 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 RNU6-95P-201ENST00000384697 107 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.84□□□□□ -2.28
COL5A3P25940 MRPL35P3-201ENST00000421557 364 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 Z82188.1-201ENST00000436709 154 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 AL035666.1-201ENST00000446195 348 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.84□□□□□ -2.28
COL5A3P25940 HMGN2P26-201ENST00000463169 339 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 AF186996.7-201ENST00000492781 209 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 AC046134.1-201ENST00000514454 666 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 RNU1-54P-201ENST00000517181 120 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 AL590705.4-201ENST00000532209 134 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 SNORA59B-202ENST00000578183 701 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 MIR4742-201ENST00000581069 85 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 AC016925.2-201ENST00000605108 242 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 RPL17P51-201ENST00000605218 238 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.84□□□□□ -2.28
COL5A3P25940 LINC02555-201ENST00000563933 1951 ntBASIC0.84□□□□□ -2.28
COL5A3P25940 ZNF204P-201ENST00000416749 2397 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 RNU6-137P-201ENST00000363680 108 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 Y_RNA.404-201ENST00000383978 102 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 RNU6-418P-201ENST00000384035 107 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 Y_RNA.473-201ENST00000384333 102 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 RNU6-831P-201ENST00000384548 107 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 RNU6-1235P-201ENST00000384559 107 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 RNU6-331P-201ENST00000384724 107 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 MIR208B-201ENST00000401172 77 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 HSPE1P21-201ENST00000438283 308 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 MTND3P10-201ENST00000450967 341 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 RNU6-498P-201ENST00000459468 107 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 AC087477.1-201ENST00000465747 340 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 RNU7-175P-201ENST00000515915 61 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.83□□□□□ -2.28
COL5A3P25940 UBL5P4-201ENST00000562584 236 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.83□□□□□ -2.28
COL5A3P25940 MIR4636-201ENST00000582271 80 ntBASIC0.83□□□□□ -2.28
COL5A3P25940 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms