Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR660-201ENST00000385235 97 ntBASIC0.81□□□□□ -2.28
USF1P22415 MTCO3P40-201ENST00000392516 676 ntBASIC0.81□□□□□ -2.28
USF1P22415 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.81□□□□□ -2.28
USF1P22415 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.81□□□□□ -2.28
USF1P22415 DAP3P1-201ENST00000441522 278 ntBASIC0.81□□□□□ -2.28
USF1P22415 Y_RNA.693-201ENST00000516641 110 ntBASIC0.81□□□□□ -2.28
USF1P22415 AK6P2-201ENST00000549020 471 ntBASIC0.81□□□□□ -2.28
USF1P22415 AC027288.2-201ENST00000553028 243 ntBASIC0.81□□□□□ -2.28
USF1P22415 FRG2DP-202ENST00000566967 323 ntBASIC0.81□□□□□ -2.28
USF1P22415 GHRLOS.1-201ENST00000610995 70 ntBASIC0.81□□□□□ -2.28
USF1P22415 AC124864.2-201ENST00000624736 186 ntBASIC0.81□□□□□ -2.28
USF1P22415 MTND4P12-201ENST00000498999 1377 ntBASIC0.81□□□□□ -2.28
USF1P22415 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
USF1P22415 MIR373-201ENST00000362273 69 ntBASIC0.8□□□□□ -2.28
USF1P22415 RNU6-280P-201ENST00000364145 104 ntBASIC0.8□□□□□ -2.28
USF1P22415 RNU6-342P-201ENST00000384521 104 ntBASIC0.8□□□□□ -2.28
USF1P22415 RNU6-541P-201ENST00000384709 110 ntBASIC0.8□□□□□ -2.28
USF1P22415 SNORA12.1-201ENST00000390873 148 ntBASIC0.8□□□□□ -2.28
USF1P22415 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.8□□□□□ -2.28
USF1P22415 RNU6-1068P-201ENST00000410958 103 ntBASIC0.8□□□□□ -2.28
USF1P22415 RNU6-1054P-201ENST00000411293 104 ntBASIC0.8□□□□□ -2.28
USF1P22415 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.8□□□□□ -2.28
USF1P22415 SEPT14P3-201ENST00000439401 183 ntBASIC0.8□□□□□ -2.28
USF1P22415 AL732372.2-207ENST00000445840 183 ntBASIC0.8□□□□□ -2.28
USF1P22415 SEPT14P2-201ENST00000453405 183 ntBASIC0.8□□□□□ -2.28
USF1P22415 TRBVA-201ENST00000498804 316 ntBASIC0.8□□□□□ -2.28
USF1P22415 SEPT14P4-201ENST00000513445 186 ntBASIC0.8□□□□□ -2.28
USF1P22415 SNORA31.2-201ENST00000516019 134 ntBASIC0.8□□□□□ -2.28
USF1P22415 RNU6-922P-201ENST00000516753 99 ntBASIC0.8□□□□□ -2.28
USF1P22415 FO082796.1-201ENST00000523795 183 ntBASIC0.8□□□□□ -2.28
USF1P22415 MIR5000-201ENST00000577717 103 ntBASIC0.8□□□□□ -2.28
USF1P22415 MIR3611-201ENST00000584484 83 ntBASIC0.8□□□□□ -2.28
USF1P22415 SNORA28-201ENST00000606769 126 ntBASIC0.8□□□□□ -2.28
USF1P22415 PVT1_3.1-201ENST00000620853 95 ntBASIC0.8□□□□□ -2.28
USF1P22415 AL359880.1-201ENST00000621879 266 ntBASIC0.8□□□□□ -2.28
USF1P22415 AC106754.2-201ENST00000623006 233 ntBASIC0.8□□□□□ -2.28
USF1P22415 AC099654.12-201ENST00000639868 649 ntBASIC0.8□□□□□ -2.28
USF1P22415 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.8□□□□□ -2.28
USF1P22415 RNU4-79P-201ENST00000362764 141 ntBASIC0.79□□□□□ -2.28
USF1P22415 SNORD114-26-201ENST00000363543 72 ntBASIC0.79□□□□□ -2.28
USF1P22415 RNU6-259P-201ENST00000383999 107 ntBASIC0.79□□□□□ -2.28
USF1P22415 Y_RNA.415-201ENST00000384012 112 ntBASIC0.79□□□□□ -2.28
USF1P22415 RNU6-793P-201ENST00000384233 104 ntBASIC0.79□□□□□ -2.28
USF1P22415 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.79□□□□□ -2.28
USF1P22415 AC105758.1-201ENST00000506038 399 ntBASIC0.79□□□□□ -2.28
USF1P22415 ACA59.1-201ENST00000515966 143 ntBASIC0.79□□□□□ -2.28
USF1P22415 RNU6-405P-201ENST00000516637 110 ntBASIC0.79□□□□□ -2.28
USF1P22415 APOOP3-201ENST00000536787 586 ntBASIC0.79□□□□□ -2.28
USF1P22415 AL512360.1-201ENST00000555346 234 ntBASIC0.79□□□□□ -2.28
USF1P22415 MTND3P12-201ENST00000559068 328 ntBASIC0.79□□□□□ -2.28
USF1P22415 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.79□□□□□ -2.28
USF1P22415 MTND1P15-201ENST00000579262 949 ntBASIC0.79□□□□□ -2.28
USF1P22415 MIR4661-201ENST00000582720 75 ntBASIC0.79□□□□□ -2.28
USF1P22415 PIGPP4-201ENST00000584447 307 ntBASIC0.79□□□□□ -2.28
USF1P22415 AC068137.4-201ENST00000638485 296 ntBASIC0.79□□□□□ -2.28
USF1P22415 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.79□□□□□ -2.28
USF1P22415 AC018630.2-201ENST00000534866 2403 ntBASIC0.78□□□□□ -2.28
USF1P22415 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
USF1P22415 Y_RNA.36-201ENST00000362602 112 ntBASIC0.78□□□□□ -2.28
USF1P22415 RNU6-727P-201ENST00000363592 107 ntBASIC0.78□□□□□ -2.28
USF1P22415 Y_RNA.373-201ENST00000365600 103 ntBASIC0.78□□□□□ -2.28
USF1P22415 RNU6-95P-201ENST00000384697 107 ntBASIC0.78□□□□□ -2.28
USF1P22415 MIR653-201ENST00000385279 96 ntBASIC0.78□□□□□ -2.28
USF1P22415 RNU6-910P-201ENST00000390844 107 ntBASIC0.78□□□□□ -2.28
USF1P22415 SNORD12-201ENST00000391002 90 ntBASIC0.78□□□□□ -2.28
USF1P22415 RNU6-159P-201ENST00000391080 106 ntBASIC0.78□□□□□ -2.28
USF1P22415 MTND1P26-201ENST00000440488 538 ntBASIC0.78□□□□□ -2.28
USF1P22415 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.78□□□□□ -2.28
USF1P22415 MTND1P11-201ENST00000456661 876 ntBASIC0.78□□□□□ -2.28
USF1P22415 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.78□□□□□ -2.28
USF1P22415 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.78□□□□□ -2.28
USF1P22415 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.78□□□□□ -2.28
USF1P22415 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.78□□□□□ -2.28
USF1P22415 ZNF519P2-201ENST00000557032 169 ntBASIC0.78□□□□□ -2.28
USF1P22415 CYP3A137P-201ENST00000562436 69 ntBASIC0.78□□□□□ -2.28
USF1P22415 AC136932.1-201ENST00000574771 208 ntBASIC0.78□□□□□ -2.28
USF1P22415 MIR3973-201ENST00000579824 107 ntBASIC0.78□□□□□ -2.28
USF1P22415 MIR4438-201ENST00000585271 93 ntBASIC0.78□□□□□ -2.28
USF1P22415 7SK.7-201ENST00000603504 247 ntBASIC0.78□□□□□ -2.28
USF1P22415 DISC2.1-201ENST00000612827 205 ntBASIC0.78□□□□□ -2.28
USF1P22415 AC009248.2-201ENST00000619826 254 ntBASIC0.78□□□□□ -2.28
USF1P22415 AC006435.5-201ENST00000624486 112 ntBASIC0.78□□□□□ -2.28
USF1P22415 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.78□□□□□ -2.28
USF1P22415 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.78□□□□□ -2.29
USF1P22415 AP000568.1-201ENST00000282964 442 ntBASIC0.77□□□□□ -2.29
USF1P22415 RNU6-199P-201ENST00000362954 107 ntBASIC0.77□□□□□ -2.29
USF1P22415 Y_RNA.372-201ENST00000365599 102 ntBASIC0.77□□□□□ -2.29
USF1P22415 RNU6-17P-201ENST00000384245 107 ntBASIC0.77□□□□□ -2.29
USF1P22415 RNU6-18P-201ENST00000384527 107 ntBASIC0.77□□□□□ -2.29
USF1P22415 MIR517A-201ENST00000385001 87 ntBASIC0.77□□□□□ -2.29
USF1P22415 RNU11-5P-201ENST00000391216 129 ntBASIC0.77□□□□□ -2.29
USF1P22415 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.77□□□□□ -2.29
USF1P22415 MTND4P18-201ENST00000447010 465 ntBASIC0.77□□□□□ -2.29
USF1P22415 MRPS10P1-201ENST00000448483 130 ntBASIC0.77□□□□□ -2.29
USF1P22415 AC091179.3-201ENST00000474761 144 ntBASIC0.77□□□□□ -2.29
USF1P22415 AC048334.1-201ENST00000477975 159 ntBASIC0.77□□□□□ -2.29
USF1P22415 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.77□□□□□ -2.29
USF1P22415 Y_RNA.665-201ENST00000516177 98 ntBASIC0.77□□□□□ -2.29
USF1P22415 RN7SKP49-201ENST00000516675 260 ntBASIC0.77□□□□□ -2.29
USF1P22415 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms