Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AP003168.1-201ENST00000530091 307 ntBASIC-0.58□□□□□ -2.5
TNFP01375 AC013828.2-201ENST00000532487 235 ntBASIC-0.58□□□□□ -2.5
TNFP01375 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.58□□□□□ -2.5
TNFP01375 AC108676.2-201ENST00000605225 163 ntBASIC-0.58□□□□□ -2.5
TNFP01375 AL359547.2-201ENST00000615810 418 ntBASIC-0.58□□□□□ -2.5
TNFP01375 AC022960.3-201ENST00000619794 441 ntBASIC-0.58□□□□□ -2.5
TNFP01375 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-0.59□□□□□ -2.5
TNFP01375 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.59□□□□□ -2.5
TNFP01375 RNY3P13-201ENST00000365542 102 ntBASIC-0.59□□□□□ -2.5
TNFP01375 MIR892B-201ENST00000401279 77 ntBASIC-0.59□□□□□ -2.5
TNFP01375 MTND3P20-201ENST00000407663 186 ntBASIC-0.59□□□□□ -2.5
TNFP01375 ELOCP17-201ENST00000414751 326 ntBASIC-0.59□□□□□ -2.5
TNFP01375 MTCYBP42-201ENST00000444653 1130 ntBASIC-0.59□□□□□ -2.5
TNFP01375 RNU7-57P-201ENST00000459540 60 ntBASIC-0.59□□□□□ -2.5
TNFP01375 AC016632.1-201ENST00000503994 196 ntBASIC-0.59□□□□□ -2.5
TNFP01375 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.59□□□□□ -2.5
TNFP01375 MIR3912-201ENST00000577566 105 ntBASIC-0.59□□□□□ -2.5
TNFP01375 AC073539.2-201ENST00000597113 165 ntBASIC-0.59□□□□□ -2.5
TNFP01375 AC099785.1-201ENST00000605697 437 ntBASIC-0.59□□□□□ -2.5
TNFP01375 AC108747.1-201ENST00000609508 535 ntBASIC-0.59□□□□□ -2.5
TNFP01375 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-0.59□□□□□ -2.5
TNFP01375 AC134878.1-201ENST00000619901 243 ntBASIC-0.59□□□□□ -2.5
TNFP01375 uc_338.22-201ENST00000622722 187 ntBASIC-0.59□□□□□ -2.5
TNFP01375 MIR6828-201ENST00000636181 60 ntBASIC-0.59□□□□□ -2.5
TNFP01375 SNORD114-14-201ENST00000362723 75 ntBASIC-0.6□□□□□ -2.51
TNFP01375 RNA5SP48-201ENST00000363969 126 ntBASIC-0.6□□□□□ -2.51
TNFP01375 Y_RNA.192-201ENST00000363977 102 ntBASIC-0.6□□□□□ -2.51
TNFP01375 RNU6-1240P-201ENST00000365155 104 ntBASIC-0.6□□□□□ -2.51
TNFP01375 SNORA67.2-201ENST00000384300 149 ntBASIC-0.6□□□□□ -2.51
TNFP01375 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.6□□□□□ -2.51
TNFP01375 MIR586-201ENST00000385035 97 ntBASIC-0.6□□□□□ -2.51
TNFP01375 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.6□□□□□ -2.51
TNFP01375 SNORA3B-201ENST00000391305 131 ntBASIC-0.6□□□□□ -2.51
TNFP01375 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-0.6□□□□□ -2.51
TNFP01375 RPL21P38-201ENST00000418090 167 ntBASIC-0.6□□□□□ -2.51
TNFP01375 AL158053.1-201ENST00000441503 453 ntBASIC-0.6□□□□□ -2.51
TNFP01375 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.6□□□□□ -2.51
TNFP01375 RNU6-221P-201ENST00000459541 99 ntBASIC-0.6□□□□□ -2.51
TNFP01375 AC091885.1-201ENST00000506658 268 ntBASIC-0.6□□□□□ -2.51
TNFP01375 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.6□□□□□ -2.51
TNFP01375 MTND3P25-201ENST00000509243 135 ntBASIC-0.6□□□□□ -2.51
TNFP01375 MRPS36P4-201ENST00000534436 298 ntBASIC-0.6□□□□□ -2.51
TNFP01375 AC087894.1-201ENST00000538359 518 ntBASIC-0.6□□□□□ -2.51
TNFP01375 MIR548AD-201ENST00000584780 82 ntBASIC-0.6□□□□□ -2.51
TNFP01375 MIR4324-201ENST00000584846 72 ntBASIC-0.6□□□□□ -2.51
TNFP01375 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC-0.6□□□□□ -2.51
TNFP01375 AC010999.1-201ENST00000611856 324 ntBASIC-0.6□□□□□ -2.51
TNFP01375 AC005562.2-201ENST00000618264 111 ntBASIC-0.6□□□□□ -2.51
TNFP01375 ZNF204P-201ENST00000416749 2397 ntBASIC-0.6□□□□□ -2.51
TNFP01375 RNU6-137P-201ENST00000363680 108 ntBASIC-0.61□□□□□ -2.51
TNFP01375 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.61□□□□□ -2.51
TNFP01375 MIR520C-201ENST00000385005 87 ntBASIC-0.61□□□□□ -2.51
TNFP01375 Z95118.1-201ENST00000421372 247 ntBASIC-0.61□□□□□ -2.51
TNFP01375 MTND1P32-201ENST00000433043 938 ntBASIC-0.61□□□□□ -2.51
TNFP01375 AC004386.2-201ENST00000441858 148 ntBASIC-0.61□□□□□ -2.51
TNFP01375 RNU7-94P-201ENST00000459576 63 ntBASIC-0.61□□□□□ -2.51
TNFP01375 RPL17P19-201ENST00000489069 552 ntBASIC-0.61□□□□□ -2.51
TNFP01375 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-0.61□□□□□ -2.51
TNFP01375 SNORA74.3-201ENST00000517108 154 ntBASIC-0.61□□□□□ -2.51
TNFP01375 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.61□□□□□ -2.51
TNFP01375 AL355297.3-201ENST00000604082 446 ntBASIC-0.61□□□□□ -2.51
TNFP01375 MIR8084-201ENST00000614105 89 ntBASIC-0.61□□□□□ -2.51
TNFP01375 MIR6514-201ENST00000622549 70 ntBASIC-0.61□□□□□ -2.51
TNFP01375 AL162376.1-201ENST00000624117 175 ntBASIC-0.61□□□□□ -2.51
TNFP01375 snoZ196.1-201ENST00000625269 89 ntBASIC-0.61□□□□□ -2.51
TNFP01375 MIR6086-201ENST00000638065 55 ntBASIC-0.61□□□□□ -2.51
TNFP01375 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.61□□□□□ -2.51
TNFP01375 RNU6-1097P-201ENST00000363586 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 Y_RNA.265-201ENST00000364677 108 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-580P-201ENST00000365159 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNY1P7-201ENST00000384743 110 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-1093P-201ENST00000391194 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RPS29P13-201ENST00000402041 169 ntBASIC-0.62□□□□□ -2.51
TNFP01375 MIR1185-2-201ENST00000408687 86 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-607P-201ENST00000411283 108 ntBASIC-0.62□□□□□ -2.51
TNFP01375 AC012306.1-201ENST00000423267 114 ntBASIC-0.62□□□□□ -2.51
TNFP01375 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-0.62□□□□□ -2.51
TNFP01375 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.62□□□□□ -2.51
TNFP01375 AC008628.2-201ENST00000502605 298 ntBASIC-0.62□□□□□ -2.51
TNFP01375 PRDX4P1-201ENST00000507189 574 ntBASIC-0.62□□□□□ -2.51
TNFP01375 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-0.62□□□□□ -2.51
TNFP01375 AC079395.1-201ENST00000510981 262 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-848P-201ENST00000515948 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-617P-201ENST00000516147 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-123P-201ENST00000516163 102 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-473P-201ENST00000516164 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-567P-201ENST00000516746 107 ntBASIC-0.62□□□□□ -2.51
TNFP01375 AC023442.1-201ENST00000531247 422 ntBASIC-0.62□□□□□ -2.51
TNFP01375 NAMPTP3-201ENST00000569273 224 ntBASIC-0.62□□□□□ -2.51
TNFP01375 AC090897.1-201ENST00000580909 226 ntBASIC-0.62□□□□□ -2.51
TNFP01375 MIR4676-201ENST00000583078 72 ntBASIC-0.62□□□□□ -2.51
TNFP01375 SNORA70.25-201ENST00000612741 95 ntBASIC-0.62□□□□□ -2.51
TNFP01375 AC012409.4-201ENST00000612923 249 ntBASIC-0.62□□□□□ -2.51
TNFP01375 AL442067.1-201ENST00000613261 223 ntBASIC-0.62□□□□□ -2.51
TNFP01375 RNU6-207P-201ENST00000384137 107 ntBASIC-0.63□□□□□ -2.51
TNFP01375 Y_RNA.471-201ENST00000384312 102 ntBASIC-0.63□□□□□ -2.51
TNFP01375 Y_RNA.504-201ENST00000384481 104 ntBASIC-0.63□□□□□ -2.51
TNFP01375 RNU6-883P-201ENST00000384597 107 ntBASIC-0.63□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms