Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.78□□□□□ -2.28
NPHP4O75161 AC245047.3-201ENST00000429428 127 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 MTND5P15-201ENST00000434246 349 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 MTND3P16-201ENST00000452205 344 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 RNU6-261P-201ENST00000459506 102 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 RNU6-221P-201ENST00000459541 99 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 RPL39P38-201ENST00000467018 153 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 AC083904.1-201ENST00000487828 231 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.78□□□□□ -2.28
NPHP4O75161 SNORD116-28-201ENST00000516123 91 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 MTND1P5-201ENST00000517906 940 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.78□□□□□ -2.28
NPHP4O75161 AK6P2-201ENST00000549020 471 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 FRG2DP-202ENST00000566967 323 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.78□□□□□ -2.28
NPHP4O75161 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 FAM157A-202ENST00000615155 405 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 AC023510.2-201ENST00000622162 746 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
NPHP4O75161 RNU1-124P-201ENST00000363861 145 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 Y_RNA.274-201ENST00000364714 101 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 Y_RNA.359-201ENST00000365498 102 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 SNORA69-201ENST00000383895 132 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 RNU6-214P-201ENST00000384130 107 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 RNU6-505P-201ENST00000384427 107 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
NPHP4O75161 RNU6-910P-201ENST00000390844 107 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.77□□□□□ -2.29
NPHP4O75161 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.77□□□□□ -2.29
NPHP4O75161 MTCO1P19-201ENST00000443487 500 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.77□□□□□ -2.29
NPHP4O75161 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.77□□□□□ -2.29
NPHP4O75161 RNU7-187P-201ENST00000458985 68 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 Y_RNA.654-201ENST00000497848 106 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 SNORA31.2-201ENST00000516019 134 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 ACA64.5-201ENST00000516207 127 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 RNU6-947P-201ENST00000516264 106 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 RNU6-344P-201ENST00000516635 111 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 RNU7-128P-201ENST00000517247 62 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 AC027419.1-201ENST00000522976 328 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 AP003484.1-201ENST00000530974 250 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.77□□□□□ -2.29
NPHP4O75161 MIR4778-201ENST00000577635 80 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 AC023932.2-201ENST00000603176 175 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 AC067863.3-201ENST00000624172 122 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 SNORD3E-202ENST00000627253 216 ntBASIC0.77□□□□□ -2.29
NPHP4O75161 SNORD50.1-201ENST00000362987 71 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 RNU6-933P-201ENST00000384424 107 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 MIR32-201ENST00000384965 70 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 AL355796.1-201ENST00000406706 323 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 CDK8P2-201ENST00000415020 547 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.76□□□□□ -2.29
NPHP4O75161 RNU6-1208P-201ENST00000459588 107 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 MTCO1P29-201ENST00000496868 288 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 RN7SKP298-201ENST00000515950 94 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 AC104383.1-201ENST00000530297 370 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 AC121247.2-201ENST00000604776 136 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 AC012676.2-201ENST00000619258 186 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.76□□□□□ -2.29
NPHP4O75161 AC008873.1-201ENST00000625051 138 ntBASIC0.76□□□□□ -2.29
NPHP4O75161 Y_RNA.151-201ENST00000363566 112 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 RNU6-950P-201ENST00000384651 107 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 RNA5SP63-201ENST00000391225 112 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
NPHP4O75161 MIR320B2-201ENST00000408479 138 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.75□□□□□ -2.29
NPHP4O75161 AC008134.1-201ENST00000420943 193 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.75□□□□□ -2.29
NPHP4O75161 SNORD124-201ENST00000459577 104 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.75□□□□□ -2.29
NPHP4O75161 SNORA25.14-201ENST00000516481 132 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.75□□□□□ -2.29
NPHP4O75161 MIR4514-201ENST00000581410 57 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 AC080078.2-201ENST00000603766 501 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 AC073534.2-201ENST00000620377 381 ntBASIC0.75□□□□□ -2.29
NPHP4O75161 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.75□□□□□ -2.29
NPHP4O75161 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
NPHP4O75161 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.74□□□□□ -2.29
NPHP4O75161 MRPL42P3-201ENST00000401492 326 ntBASIC0.74□□□□□ -2.29
NPHP4O75161 RAB28P5-201ENST00000427490 651 ntBASIC0.74□□□□□ -2.29
NPHP4O75161 HMGN1P10-201ENST00000474557 553 ntBASIC0.74□□□□□ -2.29
NPHP4O75161 AC026371.1-201ENST00000551867 419 ntBASIC0.74□□□□□ -2.29
NPHP4O75161 AC006362.1-201ENST00000567392 174 ntBASIC0.74□□□□□ -2.29
NPHP4O75161 SNORD11B-201ENST00000607707 90 ntBASIC0.74□□□□□ -2.29
NPHP4O75161 Z69908.1-201ENST00000622603 247 ntBASIC0.74□□□□□ -2.29
NPHP4O75161 SNORD113-7-201ENST00000363762 77 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 Y_RNA.363-201ENST00000365529 113 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 Y_RNA.372-201ENST00000365599 102 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 Y_RNA.415-201ENST00000384012 112 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 RNU6-790P-201ENST00000384479 105 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 Y_RNA.553-201ENST00000384670 102 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 MIR1185-2-201ENST00000408687 86 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.73□□□□□ -2.29
NPHP4O75161 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.73□□□□□ -2.29
NPHP4O75161 AC079354.2-201ENST00000453523 154 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 SCARNA16.2-201ENST00000516520 172 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 AL133215.3-201ENST00000609801 448 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 U6.73-201ENST00000619194 103 ntBASIC0.73□□□□□ -2.29
NPHP4O75161 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms