Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 AC110588.1-201ENST00000559699 137 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 MIR3124-201ENST00000582636 67 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 AC004467.1-201ENST00000615678 330 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.84-201ENST00000363011 104 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 SNORA25B-201ENST00000365507 128 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 RNU1-138P-201ENST00000384093 164 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 MT-TG-201ENST00000387429 68 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AL137159.1-201ENST00000452808 512 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC005042.3-201ENST00000453230 174 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC098869.1-201ENST00000481627 292 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-948P-201ENST00000516374 107 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 RNU2-34P-201ENST00000516534 121 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC021269.2-201ENST00000532318 330 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC006380.1-201ENST00000603598 186 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC046143.2-201ENST00000609789 160 ntBASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.74□□□□□ -1.97
LIMCH1Q9UPQ0 snoU2_19.2-201ENST00000363024 80 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.396-201ENST00000383949 103 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-472P-201ENST00000384299 107 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-505P-201ENST00000384427 107 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.518-201ENST00000384552 113 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 MIR548B-201ENST00000385247 97 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.602-201ENST00000410535 92 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 RNU2-48P-201ENST00000410694 191 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-1203P-201ENST00000410703 110 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 RPS15AP28-201ENST00000435088 386 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 AC093259.1-201ENST00000509755 300 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-570P-201ENST00000517051 105 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 MIR5007-201ENST00000583098 95 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 AC062037.2-201ENST00000610137 73 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.73□□□□□ -1.97
LIMCH1Q9UPQ0 MIR335-201ENST00000362173 94 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-975P-201ENST00000384296 105 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 MT-TW-201ENST00000387382 68 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 MIR1185-2-201ENST00000408687 86 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 RNU2-54P-201ENST00000410299 190 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AC018634.1-201ENST00000437554 401 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 MTND4LP30-201ENST00000454092 297 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 RNU7-57P-201ENST00000459540 60 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AC018868.1-201ENST00000491307 315 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AC234781.5-201ENST00000508429 271 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-667P-201ENST00000517186 102 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 NDUFA5P6-201ENST00000542110 379 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AL109918.3-201ENST00000603072 338 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AC006023.1-201ENST00000603944 259 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AL590240.4-201ENST00000616908 390 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AC006001.4-201ENST00000622243 395 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 MIR6766-201ENST00000622641 72 ntBASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
LIMCH1Q9UPQ0 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.71□□□□□ -1.97
LIMCH1Q9UPQ0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.97
LIMCH1Q9UPQ0 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.188-201ENST00000363952 111 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-290P-201ENST00000365212 101 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.331-201ENST00000365267 102 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.332-201ENST00000365271 113 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.500-201ENST00000384466 111 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 MIR215-201ENST00000384858 110 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 SRIP3-201ENST00000413200 219 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 AC009963.1-201ENST00000417265 157 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 AC123900.1-201ENST00000420390 96 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 SUMO1P4-201ENST00000429430 302 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 SUMO1P2-201ENST00000452524 304 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 AL049779.4-201ENST00000604500 156 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 AC091932.3-201ENST00000624223 323 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 snoZ196.1-201ENST00000625269 89 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
LIMCH1Q9UPQ0 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 AC005336.3-201ENST00000623833 2679 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-743P-201ENST00000364151 106 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.446-201ENST00000384178 104 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.483-201ENST00000384380 101 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms