Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MIR1244-1-201ENST00000612829 85 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR1244-3-201ENST00000635744 85 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR1244-2-201ENST00000636449 85 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR1244-4-202ENST00000636813 85 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR1302-1-201ENST00000637932 143 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 AC245060.5-201ENST00000610778 3293 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 RNU6-862P-201ENST00000362804 105 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 RNU1-17P-201ENST00000363022 152 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.179-201ENST00000363844 90 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 RNU6-99P-201ENST00000364721 107 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 RNU6-1297P-201ENST00000384415 104 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 RNU6-1001P-201ENST00000411265 100 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 AC016909.1-201ENST00000415916 166 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 AC092423.1-201ENST00000430165 186 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 MTND5P20-201ENST00000448677 143 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 RNU7-87P-201ENST00000459343 62 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 AC093023.1-201ENST00000547375 507 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 AC090617.3-201ENST00000573670 475 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 AP001094.1-201ENST00000579805 193 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 MIR502-201ENST00000606349 86 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 AC010999.1-201ENST00000611856 324 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 AC104260.1-201ENST00000616660 539 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 MTND4LP32-201ENST00000636111 270 ntBASIC1.81□□□□□ -2.12
CPSF3Q9UKF6 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.387-201ENST00000383918 102 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.557-201ENST00000384680 107 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 SNORD13-201ENST00000459299 104 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 AC010409.1-201ENST00000487382 476 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 AC022493.2-201ENST00000506122 481 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 FGF7P4-201ENST00000509595 295 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.702-201ENST00000516843 96 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 AC024614.2-201ENST00000577584 372 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 AL353149.1-201ENST00000610667 244 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 AC126177.8-201ENST00000618339 1015 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 AC006001.4-201ENST00000622243 395 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 snoZ196.1-201ENST00000625269 89 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 MTND5P35-201ENST00000557537 1720 ntBASIC1.8□□□□□ -2.12
CPSF3Q9UKF6 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 RNU6-661P-201ENST00000362409 107 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 RNU5F-3P-201ENST00000363767 117 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.529-201ENST00000384586 119 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 MIR30A-201ENST00000385092 71 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 RNU6-1009P-201ENST00000390996 107 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 AC007098.1-201ENST00000420122 367 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 HSPE1P21-201ENST00000438283 308 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 AC074290.1-201ENST00000448883 135 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 NDUFB4P10-201ENST00000452541 359 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 RPL30P15-201ENST00000457129 321 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.653-201ENST00000459091 95 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 RNU6-221P-201ENST00000459541 99 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 AL355375.2-201ENST00000574825 175 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 AC025253.1-201ENST00000613623 543 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 MIR338-201ENST00000636369 67 ntBASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CPSF3Q9UKF6 RNA5SP361-201ENST00000362686 118 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 U3.8-201ENST00000363675 217 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.263-201ENST00000364659 114 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.358-201ENST00000365491 99 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 MIR329-1-201ENST00000385028 80 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 RNY4P36-201ENST00000391116 96 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 MTCYBP4-201ENST00000401524 249 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 AC245047.4-201ENST00000433189 144 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 HMGN2P34-201ENST00000437647 269 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 MTATP6P23-201ENST00000440153 476 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 AC093019.1-201ENST00000443135 252 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.683-201ENST00000516508 93 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 AC025647.1-201ENST00000517879 253 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 SUB1P3-201ENST00000564581 315 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 AL357075.2-201ENST00000614906 189 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.78□□□□□ -2.12
CPSF3Q9UKF6 RNU6-112P-201ENST00000363599 104 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 RNA5SP99-201ENST00000364020 114 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 RNU1-96P-201ENST00000364163 162 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.259-201ENST00000364619 101 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 RNU6-296P-201ENST00000384608 107 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 MIR1185-2-201ENST00000408687 86 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 ELOCP24-201ENST00000456370 334 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 SNORA31.17-201ENST00000516953 127 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.718-201ENST00000517110 102 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 AC091144.1-201ENST00000519573 138 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 AC093027.1-201ENST00000546698 429 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 MIR3124-201ENST00000582636 67 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 215.6 ms