Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 uc_338.34-201ENST00000617467 174 ntBASIC0.63□□□□□ -2.31
USP42Q9H9J4 Y_RNA.123-201ENST00000363338 102 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 Y_RNA.381-201ENST00000365666 102 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 RNU6-1158P-201ENST00000391167 107 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 AL355796.1-201ENST00000406706 323 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 RNA5SP127-201ENST00000411051 133 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.62□□□□□ -2.31
USP42Q9H9J4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.62□□□□□ -2.31
USP42Q9H9J4 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.62□□□□□ -2.31
USP42Q9H9J4 SNORD79.1-201ENST00000516069 84 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 RNU7-128P-201ENST00000517247 62 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 AC025647.1-201ENST00000517879 253 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.62□□□□□ -2.31
USP42Q9H9J4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.62□□□□□ -2.31
USP42Q9H9J4 MIR8054-201ENST00000620877 86 ntBASIC0.62□□□□□ -2.31
USP42Q9H9J4 RNU4-76P-201ENST00000364509 141 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 RNU6-996P-201ENST00000365438 107 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 Y_RNA.363-201ENST00000365529 113 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 RNU5A-2P-201ENST00000384337 116 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 RNU6-348P-201ENST00000384386 107 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 RNU6-505P-201ENST00000384427 107 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 SNORD12-201ENST00000391002 90 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.61□□□□□ -2.31
USP42Q9H9J4 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.61□□□□□ -2.31
USP42Q9H9J4 AL353193.1-201ENST00000421444 268 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.61□□□□□ -2.31
USP42Q9H9J4 HMGB1P29-201ENST00000505659 499 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 AC010493.1-201ENST00000513479 292 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 AL118558.2-201ENST00000556294 238 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.61□□□□□ -2.31
USP42Q9H9J4 MIR4778-201ENST00000577635 80 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.61□□□□□ -2.31
USP42Q9H9J4 SCARNA4-201ENST00000629045 128 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 OR5AK4P-201ENST00000635912 903 ntBASIC0.61□□□□□ -2.31
USP42Q9H9J4 RNU6-1329P-201ENST00000365664 107 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 RNU6-440P-201ENST00000390882 105 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 RNU6-1186P-201ENST00000410429 97 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 RNU6-1054P-201ENST00000411293 104 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AL663109.1-201ENST00000411498 844 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 CDK8P2-201ENST00000415020 547 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.6□□□□□ -2.31
USP42Q9H9J4 AC114737.2-201ENST00000421583 173 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AC245047.3-201ENST00000429428 127 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.6□□□□□ -2.31
USP42Q9H9J4 RNU7-63P-201ENST00000459054 62 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 MTCO3P38-201ENST00000468910 766 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 RNU6-1038P-201ENST00000516516 104 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 MTCO2P4-201ENST00000517968 247 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 MTND4P7-201ENST00000523876 130 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
USP42Q9H9J4 SCOCP1-201ENST00000554676 349 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AC040904.1-201ENST00000590850 223 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AL359075.3-201ENST00000613288 217 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AL354950.2-201ENST00000617939 290 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AC072046.2-201ENST00000618366 268 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AC008873.1-201ENST00000625051 138 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 AC005609.4-201ENST00000625071 447 ntBASIC0.6□□□□□ -2.31
USP42Q9H9J4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.59□□□□□ -2.32
USP42Q9H9J4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
USP42Q9H9J4 SNORA80D-201ENST00000384488 135 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 AF228730.1-201ENST00000397972 663 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 AL034345.1-201ENST00000407768 123 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 RNU2-70P-201ENST00000410718 179 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 RNU6-733P-201ENST00000410759 104 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.59□□□□□ -2.32
USP42Q9H9J4 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC0.59□□□□□ -2.32
USP42Q9H9J4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.59□□□□□ -2.32
USP42Q9H9J4 MTCO2P18-201ENST00000457151 658 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 RNU6-221P-201ENST00000459541 99 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.59□□□□□ -2.32
USP42Q9H9J4 AK6P2-201ENST00000549020 471 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 MIR4528-201ENST00000577763 90 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 FGF7P1-201ENST00000582820 288 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 MIR5692C1-201ENST00000585309 91 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 AC103705.1-201ENST00000619013 241 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 snoZ196.1-201ENST00000625269 89 ntBASIC0.59□□□□□ -2.32
USP42Q9H9J4 FER-210ENST00000628534 558 ntTSL 5 BASIC0.59□□□□□ -2.32
USP42Q9H9J4 MTND4P5-201ENST00000435821 1374 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.58□□□□□ -2.32
USP42Q9H9J4 AL049545.1-201ENST00000401856 572 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 MTCO2P19-201ENST00000427513 598 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC0.58□□□□□ -2.32
USP42Q9H9J4 AL157398.1-201ENST00000452981 186 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 TPTE2P5-203ENST00000458118 728 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 MTND3P7-201ENST00000474435 343 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 RNU6-189P-201ENST00000516120 101 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 CPDP1-201ENST00000579660 283 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 AC087683.1-201ENST00000591187 441 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
USP42Q9H9J4 AC080078.2-201ENST00000603766 501 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 AL121757.2-201ENST00000611223 313 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 AC104465.1-201ENST00000611365 139 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 AL603755.1-201ENST00000619504 163 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 AC091931.1-201ENST00000623488 728 ntBASIC0.58□□□□□ -2.32
USP42Q9H9J4 ZNF204P-201ENST00000416749 2397 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 Y_RNA.378-201ENST00000365652 113 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 SNORD41-201ENST00000386967 70 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 AL606923.1-201ENST00000406616 190 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 RNU6-325P-201ENST00000411132 105 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms