Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.62□□□□□ -2.15
LIME1Q9H400 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.62□□□□□ -2.15
LIME1Q9H400 AL078596.1-201ENST00000624856 447 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
LIME1Q9H400 RNU6-1115P-201ENST00000362490 106 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 RNU4-73P-201ENST00000363164 141 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 Y_RNA.132-201ENST00000363421 102 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 U3.8-201ENST00000363675 217 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 Y_RNA.415-201ENST00000384012 112 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 RNU6-418P-201ENST00000384035 107 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MIR489-201ENST00000384923 84 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MIR329-1-201ENST00000385028 80 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 RNU11-3P-201ENST00000391111 133 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 RNA5SP501-201ENST00000410990 112 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 RNU6-1001P-201ENST00000411265 100 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MTCO2P27-201ENST00000420740 428 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 HMGN2P19-201ENST00000425149 265 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 RPL23AP50-201ENST00000434149 455 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.61□□□□□ -2.15
LIME1Q9H400 RPL30P15-201ENST00000457129 321 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 U8.22-201ENST00000459141 133 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.61□□□□□ -2.15
LIME1Q9H400 RPS29P11-201ENST00000496507 171 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.61□□□□□ -2.15
LIME1Q9H400 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.61□□□□□ -2.15
LIME1Q9H400 AC093023.1-201ENST00000547375 507 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.61□□□□□ -2.15
LIME1Q9H400 AC022254.1-201ENST00000567857 235 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MIR4287-201ENST00000579398 78 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MIR3683-201ENST00000580847 82 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 AC010999.1-201ENST00000611856 324 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MIR1244-1-201ENST00000612829 85 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 AC087588.2-201ENST00000617667 426 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 AC126177.8-201ENST00000618339 1015 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MIR1244-3-201ENST00000635744 85 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MIR1244-2-201ENST00000636449 85 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MIR1244-4-202ENST00000636813 85 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.61□□□□□ -2.15
LIME1Q9H400 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.61□□□□□ -2.15
LIME1Q9H400 ZNF702P-202ENST00000434269 1966 ntBASIC1.61□□□□□ -2.15
LIME1Q9H400 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
LIME1Q9H400 Y_RNA.67-201ENST00000362870 100 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 Y_RNA.179-201ENST00000363844 90 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 RNU6-1305P-201ENST00000364353 104 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 SNORA25.9-201ENST00000365087 128 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 Y_RNA.509-201ENST00000384506 99 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 Y_RNA.557-201ENST00000384680 107 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AL117342.1-201ENST00000404861 406 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AC016909.1-201ENST00000415916 166 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AC092423.1-201ENST00000430165 186 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.6□□□□□ -2.15
LIME1Q9H400 AC074290.1-201ENST00000448883 135 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 RNU6-221P-201ENST00000459541 99 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AL163540.1-201ENST00000485382 386 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.6□□□□□ -2.15
LIME1Q9H400 RNU6-948P-201ENST00000516374 107 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 Y_RNA.683-201ENST00000516508 93 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 MIR514B-201ENST00000516774 80 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 MIR2355-201ENST00000517199 87 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AP005660.1-201ENST00000522972 293 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.6□□□□□ -2.15
LIME1Q9H400 AC008749.1-201ENST00000597650 306 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 MZT1P2-201ENST00000604387 248 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AC091925.1-201ENST00000623204 462 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 MTND5P35-201ENST00000557537 1720 ntBASIC1.6□□□□□ -2.15
LIME1Q9H400 AC073544.1-201ENST00000600110 1595 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 AL159152.1-201ENST00000635019 2587 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 MTND5P10-201ENST00000603719 1809 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNU4-79P-201ENST00000362764 141 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNU6-490P-201ENST00000362985 107 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 SNORD87-201ENST00000364849 89 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNU6-1145P-201ENST00000384246 107 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNU6-318P-201ENST00000384283 103 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 MIR625-201ENST00000385047 85 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 AL033519.2-201ENST00000403958 392 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 AC009310.1-201ENST00000414414 451 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 AC060773.1-201ENST00000421698 310 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 UBE2V1P7-201ENST00000446395 340 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 AC016717.1-201ENST00000448918 286 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 ATP5J2P3-201ENST00000451550 258 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNA5SP233-201ENST00000459153 113 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNVU1-2-201ENST00000516326 135 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RN7SKP49-201ENST00000516675 260 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNU7-4P-201ENST00000516961 62 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNU1-117P-201ENST00000517041 158 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.59□□□□□ -2.15
LIME1Q9H400 AC084781.2-201ENST00000615568 161 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 AC005296.1-201ENST00000616145 209 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 U1.36-201ENST00000620684 176 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 SDR42E1P4-201ENST00000620894 481 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 snoZ196.1-201ENST00000625269 89 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.59□□□□□ -2.15
LIME1Q9H400 RNA5SP361-201ENST00000362686 118 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 RNU6-727P-201ENST00000363592 107 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 Y_RNA.187-201ENST00000363918 113 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 RNU5E-4P-201ENST00000364931 120 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 MIR548B-201ENST00000385247 97 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
LIME1Q9H400 MIR1185-2-201ENST00000408687 86 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 142.8 ms