Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.68□□□□□ -1.98
NUP88Q99567 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
NUP88Q99567 LINC02555-201ENST00000563933 1951 ntBASIC2.67□□□□□ -1.98
NUP88Q99567 RNU6-626P-201ENST00000363354 107 ntBASIC2.67□□□□□ -1.98
NUP88Q99567 RNU6-20P-201ENST00000384106 107 ntBASIC2.67□□□□□ -1.98
NUP88Q99567 RNU6-1310P-201ENST00000384153 107 ntBASIC2.67□□□□□ -1.98
NUP88Q99567 RNY3P15-201ENST00000516297 97 ntBASIC2.67□□□□□ -1.98
NUP88Q99567 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.67□□□□□ -1.98
NUP88Q99567 MIR4648-201ENST00000580107 72 ntBASIC2.67□□□□□ -1.98
NUP88Q99567 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.67□□□□□ -1.98
NUP88Q99567 AC010205.1-201ENST00000616668 449 ntBASIC2.67□□□□□ -1.98
NUP88Q99567 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
NUP88Q99567 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.66□□□□□ -1.98
NUP88Q99567 RNU6-1266P-201ENST00000362794 105 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 RNA5SP393-201ENST00000363423 117 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 RNU1-52P-201ENST00000384190 164 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 RNU2-20P-201ENST00000410425 191 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 AL135786.1-201ENST00000415892 214 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 NDUFB4P10-201ENST00000452541 359 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 MTND5P22-201ENST00000458380 195 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 MTATP8P1-201ENST00000467115 207 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 RNU2-34P-201ENST00000516534 121 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 RNU6-897P-201ENST00000517135 105 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 AK6P2-201ENST00000549020 471 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 MIR1273D-201ENST00000577266 86 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 MIR5007-201ENST00000583098 95 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 AL021879.1-201ENST00000611756 288 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 AC006001.4-201ENST00000622243 395 ntBASIC2.66□□□□□ -1.98
NUP88Q99567 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
NUP88Q99567 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
NUP88Q99567 RNU6-23P-201ENST00000363283 107 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 Y_RNA.153-201ENST00000363615 91 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 RNU6-1235P-201ENST00000384559 107 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 MIR29C-201ENST00000385231 88 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 RN7SKP192-201ENST00000411291 327 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 AL356320.1-201ENST00000429616 163 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
NUP88Q99567 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.65□□□□□ -1.99
NUP88Q99567 RNU6-498P-201ENST00000459468 107 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 RPL26P26-201ENST00000480251 434 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.65□□□□□ -1.99
NUP88Q99567 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.65□□□□□ -1.99
NUP88Q99567 SNORA31.15-201ENST00000516771 132 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.65□□□□□ -1.99
NUP88Q99567 AC004467.1-201ENST00000615678 330 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.65□□□□□ -1.99
NUP88Q99567 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.65□□□□□ -1.99
NUP88Q99567 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
NUP88Q99567 RNU6-937P-201ENST00000384325 106 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 MIR221-201ENST00000385135 110 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 RNU6-130P-201ENST00000411112 103 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 CR769767.1-201ENST00000436337 346 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 AC005002.2-201ENST00000438228 269 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 AL357134.1-201ENST00000445848 426 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 snoU13.26-201ENST00000459452 105 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 RNU6-1046P-201ENST00000516538 107 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 RNU6-635P-201ENST00000516651 102 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 RNA5SP137-201ENST00000516833 135 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 RNU7-110P-201ENST00000516891 62 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 AP005660.1-201ENST00000522972 293 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.64□□□□□ -1.99
NUP88Q99567 MIR4446-201ENST00000578505 67 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.64□□□□□ -1.99
NUP88Q99567 AC136443.5-201ENST00000603741 370 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.64□□□□□ -1.99
NUP88Q99567 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.64□□□□□ -1.99
NUP88Q99567 MIR376A1-201ENST00000616574 68 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 AL590240.4-201ENST00000616908 390 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 MIR7843-201ENST00000622274 79 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 MIR6873-201ENST00000622788 63 ntBASIC2.64□□□□□ -1.99
NUP88Q99567 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
NUP88Q99567 SNORA64-201ENST00000384674 134 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 MIR1253-201ENST00000408273 105 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 MIR1185-2-201ENST00000408687 86 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 RNU5A-5P-201ENST00000411054 116 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.63□□□□□ -1.99
NUP88Q99567 SUMO1P4-201ENST00000429430 302 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 MTCO1P44-201ENST00000441935 243 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 snoU13.15-201ENST00000459407 104 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 AC010655.3-201ENST00000478818 450 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
NUP88Q99567 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.63□□□□□ -1.99
NUP88Q99567 AC006380.1-201ENST00000603598 186 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 AC011373.1-201ENST00000607270 237 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.63□□□□□ -1.99
NUP88Q99567 AC091932.3-201ENST00000624223 323 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 AL159152.1-201ENST00000635019 2587 ntBASIC2.63□□□□□ -1.99
NUP88Q99567 RNU6-238P-201ENST00000363313 106 ntBASIC2.62□□□□□ -1.99
NUP88Q99567 Y_RNA.183-201ENST00000363882 113 ntBASIC2.62□□□□□ -1.99
NUP88Q99567 SNORA3A-201ENST00000364113 130 ntBASIC2.62□□□□□ -1.99
NUP88Q99567 SNORA67.3-201ENST00000384366 140 ntBASIC2.62□□□□□ -1.99
NUP88Q99567 RNU6-21P-201ENST00000384710 107 ntBASIC2.62□□□□□ -1.99
NUP88Q99567 MIR524-201ENST00000385242 87 ntBASIC2.62□□□□□ -1.99
NUP88Q99567 AC008134.1-201ENST00000420943 193 ntBASIC2.62□□□□□ -1.99
NUP88Q99567 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.62□□□□□ -1.99
NUP88Q99567 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.62□□□□□ -1.99
NUP88Q99567 AC008269.2-201ENST00000561915 1105 ntBASIC2.62□□□□□ -1.99
NUP88Q99567 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.62□□□□□ -1.99
NUP88Q99567 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
NUP88Q99567 Y_RNA.19-201ENST00000362462 99 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms