Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
LMX1AQ8TE12 EIF4E2P1-201ENST00000393781 255 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNU6-57P-201ENST00000411348 103 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC074290.1-201ENST00000448883 135 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 MTND3P16-201ENST00000452205 344 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC079354.2-201ENST00000453523 154 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 SRRM1P2-201ENST00000464531 1192 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC117454.1-201ENST00000491120 168 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 MTCO1P29-201ENST00000496868 288 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNA5SP401-201ENST00000515920 127 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNA5SP54-201ENST00000516951 92 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 CYCSP23-201ENST00000519781 313 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 MTND1P35-201ENST00000526739 508 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AK6P2-201ENST00000549020 471 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC004584.2-201ENST00000570407 410 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC005730.3-201ENST00000583067 366 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC119751.7-201ENST00000600494 245 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC106800.4-201ENST00000614905 153 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC073534.2-201ENST00000620377 381 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 MIR6513-201ENST00000621188 64 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC068792.1-201ENST00000621354 417 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 AC006001.4-201ENST00000622243 395 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNU6-137P-201ENST00000363680 108 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 Y_RNA.296-201ENST00000364930 108 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 RNU1-36P-201ENST00000365130 165 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 RNU6-214P-201ENST00000384130 107 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 Y_RNA.481-201ENST00000384373 102 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 CALM2P3-201ENST00000400429 449 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 RNU4-55P-201ENST00000410731 137 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC0.69□□□□□ -2.3
LMX1AQ8TE12 AC008134.1-201ENST00000420943 193 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.69□□□□□ -2.3
LMX1AQ8TE12 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.69□□□□□ -2.3
LMX1AQ8TE12 AC007834.2-201ENST00000536310 343 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.69□□□□□ -2.3
LMX1AQ8TE12 AC063944.3-201ENST00000609969 533 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 AC007742.2-201ENST00000618226 398 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 AL078596.1-201ENST00000624856 447 ntBASIC0.69□□□□□ -2.3
LMX1AQ8TE12 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
LMX1AQ8TE12 ZNF204P-201ENST00000416749 2397 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 Y_RNA.77-201ENST00000362962 107 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 SNORD115-32-201ENST00000364079 82 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 MIR146A-201ENST00000385201 99 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 DEFB108C-201ENST00000400154 252 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 MIR1185-2-201ENST00000408687 86 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 RNU6-1054P-201ENST00000411293 104 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 AC010154.1-201ENST00000425857 269 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 MRPS10P2-201ENST00000431226 381 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.68□□□□□ -2.3
LMX1AQ8TE12 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.68□□□□□ -2.3
LMX1AQ8TE12 TPT1P7-201ENST00000458300 517 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.68□□□□□ -2.3
LMX1AQ8TE12 RNU1-142P-201ENST00000516682 145 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 SUMO2P16-201ENST00000519475 264 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.68□□□□□ -2.3
LMX1AQ8TE12 AC004812.1-201ENST00000540773 146 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.68□□□□□ -2.3
LMX1AQ8TE12 MIR5695-201ENST00000579717 85 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 AC008088.1-201ENST00000580993 280 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.68□□□□□ -2.3
LMX1AQ8TE12 AL359075.3-201ENST00000613288 217 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 U6.73-201ENST00000619194 103 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 MIR8054-201ENST00000620877 86 ntBASIC0.68□□□□□ -2.3
LMX1AQ8TE12 RNU6-254P-201ENST00000363377 107 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 RNA5SP259-201ENST00000365541 109 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 MIR1253-201ENST00000408273 105 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 MIR320B2-201ENST00000408479 138 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 RN7SKP200-201ENST00000410564 320 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.67□□□□□ -2.3
LMX1AQ8TE12 RAB28P5-201ENST00000427490 651 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 HSPE1P13-201ENST00000451143 297 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 RNU7-34P-201ENST00000459394 64 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.67□□□□□ -2.3
LMX1AQ8TE12 RNU6-58P-201ENST00000517143 103 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
LMX1AQ8TE12 OSBPL9P5-201ENST00000542581 171 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.67□□□□□ -2.3
LMX1AQ8TE12 AC146944.4-201ENST00000602697 718 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 AL513534.2-201ENST00000603836 250 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 RNU6-89P-201ENST00000606519 100 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 SNORD11B-201ENST00000607707 90 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 AC097065.2-201ENST00000608159 533 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 AL021879.1-201ENST00000611756 288 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.67□□□□□ -2.3
LMX1AQ8TE12 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.67□□□□□ -2.3
LMX1AQ8TE12 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AC008163.1-202ENST00000636004 2889 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 U3.8-201ENST00000363675 217 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.66□□□□□ -2.3
LMX1AQ8TE12 RNU6-128P-201ENST00000383976 107 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 MIR521-1-201ENST00000384902 87 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 MIR653-201ENST00000385279 96 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 RNU6-440P-201ENST00000390882 105 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AC010424.1-201ENST00000506336 297 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AC103851.1-201ENST00000506833 274 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms