Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC027124.2-201ENST00000428249 105 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 AC004386.2-201ENST00000441858 148 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 YWHAEP4-201ENST00000505390 198 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 RNA5SP24-201ENST00000516478 95 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 AC093331.1-201ENST00000521474 169 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 AC005562.2-201ENST00000618264 111 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.75-201ENST00000362927 97 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.343-201ENST00000365354 112 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.357-201ENST00000365487 109 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-449P-201ENST00000383914 107 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 SNORD116-18-201ENST00000383961 92 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 SNORA70B-201ENST00000384210 135 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 MIR518C-201ENST00000384822 101 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 RNU2-2P-201ENST00000410396 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 RNU2-49P-201ENST00000410666 184 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 AC091179.1-201ENST00000461606 579 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 RPL31P41-201ENST00000477967 372 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-711P-201ENST00000517255 106 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 RNU2-4P-201ENST00000606190 192 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.15-201ENST00000611544 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.16-201ENST00000613119 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.12-201ENST00000613778 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.9-201ENST00000615427 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.11-201ENST00000616345 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.2-201ENST00000616535 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.3-201ENST00000617785 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.19-201ENST00000618602 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 RNU2-1-201ENST00000618664 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.6-201ENST00000619225 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.5-201ENST00000619465 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 U2.10-201ENST00000620268 191 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 AC010680.1-201ENST00000590024 3590 ntBASIC3.45□□□□□ -1.86
USHBP1Q8N6Y0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.23-201ENST00000362496 106 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-1130P-201ENST00000365434 107 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-1117P-201ENST00000384525 104 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-750P-201ENST00000390946 107 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 RPS20P10-201ENST00000451209 253 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 U8.19-201ENST00000459095 133 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 RPS27AP9-201ENST00000477681 438 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 RPL23AP70-201ENST00000483361 460 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 AC005840.1-201ENST00000498412 377 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 RNA5SP282-201ENST00000516355 108 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 AC136628.3-201ENST00000521868 290 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 MIR5006-201ENST00000583027 110 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 AL078604.3-201ENST00000615580 211 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 AC068205.3-201ENST00000636385 468 ntBASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.44□□□□□ -1.86
USHBP1Q8N6Y0 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-801P-201ENST00000364087 105 ntBASIC3.43□□□□□ -1.86
USHBP1Q8N6Y0 RNU4-17P-201ENST00000365598 141 ntBASIC3.43□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-763P-201ENST00000390865 106 ntBASIC3.43□□□□□ -1.86
USHBP1Q8N6Y0 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.43□□□□□ -1.86
USHBP1Q8N6Y0 RNU2-44P-201ENST00000516795 194 ntBASIC3.43□□□□□ -1.86
USHBP1Q8N6Y0 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.43□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-1210P-201ENST00000363775 107 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.182-201ENST00000363880 111 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 SNORA14A-201ENST00000364773 135 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 SNORD87-201ENST00000364849 89 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.400-201ENST00000383963 111 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.497-201ENST00000384447 98 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-710P-201ENST00000410424 105 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 AC145146.1-201ENST00000496370 254 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 MIR3605-201ENST00000583214 100 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 AL391813.1-201ENST00000603098 260 ntBASIC3.42□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-655P-201ENST00000362858 107 ntBASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 RNU4-84P-201ENST00000364200 139 ntBASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.412-201ENST00000384001 104 ntBASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 MIR186-201ENST00000384988 86 ntBASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 AC004866.1-201ENST00000411748 78 ntBASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 AL031183.1-201ENST00000457667 207 ntBASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.41□□□□□ -1.86
USHBP1Q8N6Y0 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.243-201ENST00000364481 109 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 SNORA18.2-201ENST00000383865 132 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.488-201ENST00000384403 102 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 RNU1-57P-201ENST00000384491 166 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 SEPT7P4-201ENST00000437076 306 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.797-201ENST00000515977 94 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 SNORD59.2-201ENST00000516873 68 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 RNU1-117P-201ENST00000517041 158 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 AC021269.2-201ENST00000532318 330 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms