Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 AC010154.1-201ENST00000425857 269 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 Z82188.1-201ENST00000436709 154 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNU7-40P-201ENST00000516397 64 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNA5SP61-201ENST00000516453 100 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNU6-58P-201ENST00000517143 103 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 MTND2P38-201ENST00000522536 667 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 AL137100.2-201ENST00000555786 315 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 AC008269.2-201ENST00000561915 1105 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 FAM106DP-201ENST00000586416 501 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 7SK.7-201ENST00000603504 247 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 AC099654.5-201ENST00000636479 350 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNA5SP327-201ENST00000362494 101 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 SNORD87-201ENST00000364849 89 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 MIR517A-201ENST00000385001 87 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 RN7SKP200-201ENST00000410564 320 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 RNA5SP504-201ENST00000410676 117 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 RNU2-16P-201ENST00000410712 136 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 AC019235.1-201ENST00000503847 207 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 RNU6-1223P-201ENST00000517124 104 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 SUMO2P16-201ENST00000519475 264 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 MIR4742-201ENST00000581069 85 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 MIR3660-201ENST00000584845 100 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 MZT1P2-201ENST00000604387 248 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 AC021506.2-201ENST00000612354 169 ntBASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
HDDC3Q8N4P3 RNU6-873P-201ENST00000363833 107 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 Y_RNA.530-201ENST00000384587 101 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 MIR520E-201ENST00000384867 87 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 AL590632.1-201ENST00000424289 371 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 AL445305.1-201ENST00000432577 575 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 RPS29P1-201ENST00000465274 159 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 MIR151B-201ENST00000584249 96 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 AC080078.3-201ENST00000605407 463 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 AC019193.3-201ENST00000609144 554 ntBASIC1.28□□□□□ -2.2
HDDC3Q8N4P3 Y_RNA.36-201ENST00000362602 112 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 RNU6-727P-201ENST00000363592 107 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 U3.8-201ENST00000363675 217 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 RNU5F-3P-201ENST00000363767 117 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 RNU1-93P-201ENST00000364704 169 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 RNU6-1031P-201ENST00000384773 107 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 MIR758-201ENST00000390227 88 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 RPL37P10-201ENST00000412884 288 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 AC245047.3-201ENST00000429428 127 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 AC005002.2-201ENST00000438228 269 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 MTCO3P18-201ENST00000440206 761 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 AL606517.2-201ENST00000442855 241 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 MTND1P1-201ENST00000445453 368 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 RPS27P1-201ENST00000450552 247 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 HMGN2P26-201ENST00000463169 339 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 RNU6-256P-201ENST00000516747 97 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 AC022432.1-201ENST00000595739 310 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 AC073413.2-201ENST00000604332 360 ntBASIC1.27□□□□□ -2.21
HDDC3Q8N4P3 SNORD114-27-201ENST00000363766 70 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 RNU6-280P-201ENST00000364145 104 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 MIR598-201ENST00000384868 97 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 MIR618-201ENST00000385287 98 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 RPL30P16-201ENST00000419341 429 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 PGBD4P5-201ENST00000445958 426 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 NDUFB4P10-201ENST00000452541 359 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 MTND1P11-201ENST00000456661 876 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 TPRKBP2-201ENST00000565969 475 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 MIR3664-201ENST00000579074 99 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 PIGPP4-201ENST00000584447 307 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 AC124303.1-201ENST00000605703 360 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 AL138726.1-201ENST00000614873 333 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.26□□□□□ -2.21
HDDC3Q8N4P3 MTND4P12-201ENST00000498999 1377 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 Y_RNA.415-201ENST00000384012 112 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 SNORD116-2-201ENST00000384274 95 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 Y_RNA.559-201ENST00000384686 107 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 SNORD116-6-201ENST00000384711 96 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 RNU6-908P-201ENST00000410160 94 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 ZNF885P-201ENST00000420174 1098 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 MTND1P29-201ENST00000448112 647 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 AL133373.1-201ENST00000497098 94 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 AC027288.2-201ENST00000553028 243 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 AC022217.4-201ENST00000604389 163 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 AC092954.2-201ENST00000609103 430 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 MIR6779-201ENST00000617283 64 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 MIR6788-201ENST00000618842 66 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 MIR8054-201ENST00000620877 86 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 U6.108-201ENST00000637764 58 ntBASIC1.25□□□□□ -2.21
HDDC3Q8N4P3 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 RNU6-137P-201ENST00000363680 108 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms