Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.219-201ENST00000364232 113 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 RNA5SP42-201ENST00000364278 115 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 SNORD12C-201ENST00000386307 89 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 AC008011.1-201ENST00000545989 227 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 AC007012.1-201ENST00000567192 175 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 RPL23AP91-201ENST00000569211 455 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 AC097639.2-201ENST00000603159 172 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 MIR8057-201ENST00000620957 69 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 AC006435.5-201ENST00000624486 112 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 AC090517.3-201ENST00000625170 141 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 AC002546.1-201ENST00000588041 2504 ntBASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SH3RF1Q7Z6J0 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.91-201ENST00000363042 107 ntBASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 RNA5SP511-201ENST00000410487 115 ntBASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 RNA5SP127-201ENST00000411051 133 ntBASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 AC005326.1-201ENST00000429197 123 ntBASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-970P-201ENST00000516312 107 ntBASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 IGKV1-22-201ENST00000524313 326 ntBASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 MIR4738-201ENST00000579134 87 ntBASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 AL022345.2-201ENST00000606307 135 ntBASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SH3RF1Q7Z6J0 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 AC103988.1-201ENST00000566382 2177 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 SNORD9-201ENST00000362566 104 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.203-201ENST00000364106 102 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 RNU1-33P-201ENST00000364249 162 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-975P-201ENST00000384296 105 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-440P-201ENST00000390882 105 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 MIR1294-201ENST00000408503 142 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 CYCSP4-201ENST00000429682 331 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 RPS29P31-201ENST00000446147 164 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 AC010531.2-201ENST00000465012 153 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 uc_338.32-201ENST00000615087 172 ntBASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SH3RF1Q7Z6J0 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.52-201ENST00000362760 96 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.544-201ENST00000384650 113 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 MIR450A2-201ENST00000385022 100 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 AC017083.1-201ENST00000428093 483 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 SNORD105B-201ENST00000458770 79 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 RN7SL807P-201ENST00000470923 297 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 AC015720.1-201ENST00000565251 277 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 MIR4662B-201ENST00000579498 81 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 MIR4513-201ENST00000581077 86 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 AL929325.1-201ENST00000603096 117 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 YPEL5P2-201ENST00000605553 359 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-94P-201ENST00000607728 107 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 AC134878.1-201ENST00000619901 243 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 AC009487.4-201ENST00000624969 3585 ntBASIC4.12□□□□□ -1.75
SH3RF1Q7Z6J0 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 RNA5SP502-201ENST00000362694 119 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 RNA5SP125-201ENST00000364843 120 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.500-201ENST00000384466 111 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 RNY1P7-201ENST00000384743 110 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 MIR624-201ENST00000385217 97 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 AC008134.1-201ENST00000420943 193 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 RNA5SP281-201ENST00000516504 135 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 AC025647.1-201ENST00000517879 253 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 Pinc.1-201ENST00000616452 154 ntBASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC4.11□□□□□ -1.75
SH3RF1Q7Z6J0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 MIR423-201ENST00000362201 94 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-1014P-201ENST00000383940 103 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-1113P-201ENST00000384348 107 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.549-201ENST00000384657 102 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 AC097463.2-201ENST00000421074 142 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 AL021397.1-201ENST00000451806 248 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms