Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC123900.1-201ENST00000420390 96 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 HMGN2P38-201ENST00000423806 265 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 HMGN2P19-201ENST00000425149 265 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 UBE2V1P7-201ENST00000446395 340 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 AC245102.2-201ENST00000448956 180 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 AC026436.1-201ENST00000510537 270 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 RPL17P51-201ENST00000605218 238 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 MIR6766-201ENST00000622641 72 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 LINC02555-201ENST00000563933 1951 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 MIR378A-201ENST00000362177 66 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 RNU4-42P-201ENST00000364738 142 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 RNU4-52P-201ENST00000384209 138 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 MIR29C-201ENST00000385231 88 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 MIR613-201ENST00000385248 95 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 RNU6-57P-201ENST00000411348 103 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 UQCRBP2-201ENST00000447827 297 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 RNU7-57P-201ENST00000459540 60 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 AC010531.2-201ENST00000465012 153 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 HMGN2P9-201ENST00000476875 229 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.683-201ENST00000516508 93 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 HSBP1P1-201ENST00000555205 166 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 AL357075.2-201ENST00000614906 189 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 AC011476.5-201ENST00000615594 130 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 U2.1-201ENST00000618978 145 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 AC022140.2-201ENST00000623500 188 ntBASIC1.85□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.99-201ENST00000363138 105 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNA5SP325-201ENST00000363756 130 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNU6-1164P-201ENST00000364428 107 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.332-201ENST00000365271 113 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNA5SP37-201ENST00000365420 130 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNU6-474P-201ENST00000384243 107 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNU6-318P-201ENST00000384283 103 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNU6-160P-201ENST00000384591 107 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 MIR300-201ENST00000401138 83 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNA5SP504-201ENST00000410676 117 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 MTND4P28-201ENST00000426217 387 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 AC018634.1-201ENST00000437554 401 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 AC016925.1-201ENST00000458303 298 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 TRMT112P2-201ENST00000512910 132 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNU6-976P-201ENST00000516086 111 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 RNU6-344P-201ENST00000516635 111 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 AC021269.2-201ENST00000532318 330 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 GNAI2P1-201ENST00000541815 315 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 CYP2C61P-201ENST00000604072 290 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 AC083806.3-201ENST00000614016 455 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 AL773524.1-201ENST00000614065 229 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 AC006001.4-201ENST00000622243 395 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 uc_338.22-201ENST00000622722 187 ntBASIC1.84□□□□□ -2.11
PDLIM3Q53GG5 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 RNU1-62P-201ENST00000362599 164 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 RNU6-1301P-201ENST00000362724 104 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.112-201ENST00000363250 102 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 RNU6-137P-201ENST00000363680 108 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 RNA5SP493-201ENST00000364115 91 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.216-201ENST00000364205 93 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 RNY1P14-201ENST00000384426 108 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 SNORA51.11-201ENST00000384442 131 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 MIR329-1-201ENST00000385028 80 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 MIR548B-201ENST00000385247 97 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 SNORD12B-201ENST00000410433 91 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 RPS20P15-201ENST00000412792 311 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 MTND1P14-201ENST00000427400 950 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 RNU6-1041P-201ENST00000516254 102 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 AC027419.1-201ENST00000522976 328 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 SNRPGP18-201ENST00000553000 214 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 AC009831.4-201ENST00000620744 325 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 AC068205.3-201ENST00000636385 468 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 AL159152.1-201ENST00000635019 2587 ntBASIC1.83□□□□□ -2.12
PDLIM3Q53GG5 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 MIR340-201ENST00000362125 95 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.39-201ENST00000362620 98 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 RNU5F-3P-201ENST00000363767 117 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 U8.13-201ENST00000390842 128 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 SNORA48.3-201ENST00000391081 134 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 RPS15AP28-201ENST00000435088 386 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 MTND2P29-201ENST00000438595 412 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 AC007395.1-201ENST00000451333 677 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 AC114982.1-201ENST00000469402 321 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 AL163540.1-201ENST00000485382 386 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 AC005840.1-201ENST00000498412 377 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 RN7SKP295-201ENST00000517264 153 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 AC091144.1-201ENST00000519573 138 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 SNORA4-201ENST00000584302 138 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 AL359821.1-201ENST00000605519 182 ntBASIC1.82□□□□□ -2.12
PDLIM3Q53GG5 AC091812.1-201ENST00000432235 1948 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.252-201ENST00000364556 101 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 SNORD42.2-201ENST00000365570 69 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 RNU6-975P-201ENST00000384296 105 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 SNORA67.2-201ENST00000384300 149 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms