Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MIR221-201ENST00000385135 110 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL28A1Q2UY09 RPL21P1-201ENST00000399532 476 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 MIR1283-2-201ENST00000408621 87 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 BTF3P4-201ENST00000418852 495 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 AC139712.2-201ENST00000424302 339 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.1□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.631-201ENST00000459607 101 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 AC090255.1-201ENST00000495779 349 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.1□□□□□ -2.07
COL28A1Q2UY09 RNU4-77P-201ENST00000516692 156 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 AC092447.9-201ENST00000603395 144 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.1□□□□□ -2.07
COL28A1Q2UY09 AC130454.1-201ENST00000622948 401 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.1□□□□□ -2.07
COL28A1Q2UY09 AC134503.1-201ENST00000633048 54 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 AL606534.2-204ENST00000635008 178 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
COL28A1Q2UY09 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
COL28A1Q2UY09 RNA5SP361-201ENST00000362686 118 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 SNORD114-6-201ENST00000364393 72 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 RNU4-52P-201ENST00000384209 138 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 RNY1P14-201ENST00000384426 108 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 MTCO3P19-201ENST00000415864 321 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 MTND2P29-201ENST00000438595 412 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 AL353689.1-201ENST00000438895 199 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 CHEK2P4-201ENST00000450340 246 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.661-201ENST00000516003 99 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 SNORA40.14-201ENST00000516543 86 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 RNU1-117P-201ENST00000517041 158 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 RNU2-19P-201ENST00000517288 84 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 AK6P2-201ENST00000549020 471 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 MIR3169-201ENST00000578032 83 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 MIR6766-201ENST00000622641 72 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 AC012640.5-201ENST00000623897 319 ntBASIC2.09□□□□□ -2.07
COL28A1Q2UY09 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
COL28A1Q2UY09 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
COL28A1Q2UY09 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
COL28A1Q2UY09 MTND4P1-201ENST00000457501 1466 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 MIR410-201ENST00000362222 80 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.27-201ENST00000362540 103 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 RNA5SP493-201ENST00000364115 91 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.394-201ENST00000383942 103 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.445-201ENST00000384168 102 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 MIR628-201ENST00000385229 95 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 PCNPP5-201ENST00000452246 481 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 RNU7-57P-201ENST00000459540 60 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 AC055731.1-201ENST00000474387 401 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 AC104435.1-201ENST00000483483 166 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
COL28A1Q2UY09 snoZ196.1-201ENST00000625269 89 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 MIR203B-201ENST00000636080 86 ntBASIC2.08□□□□□ -2.08
COL28A1Q2UY09 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.08□□□□□ -2.08
COL28A1Q2UY09 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.08□□□□□ -2.08
COL28A1Q2UY09 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
COL28A1Q2UY09 RNU6-23P-201ENST00000363283 107 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 RNU6-727P-201ENST00000363592 107 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 SNORD87-201ENST00000364849 89 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 RNU6-1264P-201ENST00000383891 107 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 RNU6-474P-201ENST00000384243 107 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 MIR548B-201ENST00000385247 97 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 PMCHL1-202ENST00000423102 261 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 BX510359.4-201ENST00000423750 193 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 MTCO2P12-201ENST00000427426 682 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 TOMM22P2-201ENST00000430735 237 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 AC018634.1-201ENST00000437554 401 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.07□□□□□ -2.08
COL28A1Q2UY09 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.07□□□□□ -2.08
COL28A1Q2UY09 RNU7-169P-201ENST00000459456 61 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 RNU6-221P-201ENST00000459541 99 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 AC093852.1-201ENST00000503587 266 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.07□□□□□ -2.08
COL28A1Q2UY09 AC006600.1-201ENST00000572529 153 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.07□□□□□ -2.08
COL28A1Q2UY09 AL353149.1-201ENST00000610667 244 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 MIR6840-201ENST00000611937 71 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 AL590240.4-201ENST00000616908 390 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 AP000553.5-201ENST00000641933 54 ntBASIC2.07□□□□□ -2.08
COL28A1Q2UY09 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
COL28A1Q2UY09 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
COL28A1Q2UY09 SNORD115-3-201ENST00000363100 82 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 RNY3P11-201ENST00000364153 102 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.813-201ENST00000364639 102 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 RNU6-418P-201ENST00000384035 107 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 MIR548P-201ENST00000408336 84 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 MIR1185-2-201ENST00000408687 86 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 SNORD12B-201ENST00000410433 91 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 RNA5SP450-201ENST00000411206 102 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 ELOCP21-201ENST00000412558 336 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 AL354751.2-201ENST00000415471 210 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 MCFD2P1-201ENST00000417812 300 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 HMGN2P38-201ENST00000423806 265 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 MTND4P19-201ENST00000446659 478 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 UQCRBP2-201ENST00000447827 297 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.06□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.701-201ENST00000516812 110 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms