Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.22□□□□□ -2.05
CTCFP49711 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.22□□□□□ -2.05
CTCFP49711 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.22□□□□□ -2.05
CTCFP49711 ATP5J2P3-201ENST00000451550 258 ntBASIC2.22□□□□□ -2.05
CTCFP49711 RPL23AP3-201ENST00000453844 468 ntBASIC2.22□□□□□ -2.05
CTCFP49711 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.22□□□□□ -2.05
CTCFP49711 RNU6-470P-201ENST00000515954 104 ntBASIC2.22□□□□□ -2.05
CTCFP49711 RNU6-1114P-201ENST00000516022 107 ntBASIC2.22□□□□□ -2.05
CTCFP49711 SNORA25.14-201ENST00000516481 132 ntBASIC2.22□□□□□ -2.05
CTCFP49711 RNU6-344P-201ENST00000516635 111 ntBASIC2.22□□□□□ -2.05
CTCFP49711 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.22□□□□□ -2.05
CTCFP49711 AC136443.5-201ENST00000603741 370 ntBASIC2.22□□□□□ -2.05
CTCFP49711 AC084781.2-201ENST00000615568 161 ntBASIC2.22□□□□□ -2.05
CTCFP49711 uc_338.20-201ENST00000621563 178 ntBASIC2.22□□□□□ -2.05
CTCFP49711 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CTCFP49711 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.21□□□□□ -2.06
CTCFP49711 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.21□□□□□ -2.06
CTCFP49711 RNU4-79P-201ENST00000362764 141 ntBASIC2.21□□□□□ -2.06
CTCFP49711 SNORD114-6-201ENST00000364393 72 ntBASIC2.21□□□□□ -2.06
CTCFP49711 Y_RNA.364-201ENST00000365532 101 ntBASIC2.21□□□□□ -2.06
CTCFP49711 MIR559-201ENST00000385188 96 ntBASIC2.21□□□□□ -2.06
CTCFP49711 MIR300-201ENST00000401138 83 ntBASIC2.21□□□□□ -2.06
CTCFP49711 MIR1283-1-201ENST00000408494 87 ntBASIC2.21□□□□□ -2.06
CTCFP49711 RNA5SP504-201ENST00000410676 117 ntBASIC2.21□□□□□ -2.06
CTCFP49711 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.21□□□□□ -2.06
CTCFP49711 BX510359.4-201ENST00000423750 193 ntBASIC2.21□□□□□ -2.06
CTCFP49711 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.21□□□□□ -2.06
CTCFP49711 USP9YP16-201ENST00000430287 407 ntBASIC2.21□□□□□ -2.06
CTCFP49711 USP9YP23-201ENST00000455085 407 ntBASIC2.21□□□□□ -2.06
CTCFP49711 MTND5P16-201ENST00000460269 1703 ntBASIC2.21□□□□□ -2.06
CTCFP49711 RRN3P3-201ENST00000549207 578 ntBASIC2.21□□□□□ -2.06
CTCFP49711 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.21□□□□□ -2.06
CTCFP49711 AL096840.1-201ENST00000603287 93 ntBASIC2.21□□□□□ -2.06
CTCFP49711 AL627230.6-201ENST00000611129 280 ntBASIC2.21□□□□□ -2.06
CTCFP49711 AC133104.2-201ENST00000615272 193 ntBASIC2.21□□□□□ -2.06
CTCFP49711 RNA5SP276-201ENST00000362580 94 ntBASIC2.2□□□□□ -2.06
CTCFP49711 Y_RNA.509-201ENST00000384506 99 ntBASIC2.2□□□□□ -2.06
CTCFP49711 RNU6-160P-201ENST00000384591 107 ntBASIC2.2□□□□□ -2.06
CTCFP49711 Y_RNA.577-201ENST00000384794 101 ntBASIC2.2□□□□□ -2.06
CTCFP49711 RNA5SP450-201ENST00000411206 102 ntBASIC2.2□□□□□ -2.06
CTCFP49711 AC007098.1-201ENST00000420122 367 ntBASIC2.2□□□□□ -2.06
CTCFP49711 MTCO2P27-201ENST00000420740 428 ntBASIC2.2□□□□□ -2.06
CTCFP49711 AC092423.1-201ENST00000430165 186 ntBASIC2.2□□□□□ -2.06
CTCFP49711 MTCO1P44-201ENST00000441935 243 ntBASIC2.2□□□□□ -2.06
CTCFP49711 AC010531.2-201ENST00000465012 153 ntBASIC2.2□□□□□ -2.06
CTCFP49711 AC093303.1-201ENST00000514549 295 ntBASIC2.2□□□□□ -2.06
CTCFP49711 C8orf59P2-201ENST00000603441 271 ntBASIC2.2□□□□□ -2.06
CTCFP49711 MIR1244-1-201ENST00000612829 85 ntBASIC2.2□□□□□ -2.06
CTCFP49711 AC091932.3-201ENST00000624223 323 ntBASIC2.2□□□□□ -2.06
CTCFP49711 AC008873.1-201ENST00000625051 138 ntBASIC2.2□□□□□ -2.06
CTCFP49711 MIR1244-3-201ENST00000635744 85 ntBASIC2.2□□□□□ -2.06
CTCFP49711 MIR1244-2-201ENST00000636449 85 ntBASIC2.2□□□□□ -2.06
CTCFP49711 MIR1244-4-202ENST00000636813 85 ntBASIC2.2□□□□□ -2.06
CTCFP49711 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.2□□□□□ -2.06
CTCFP49711 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.2□□□□□ -2.06
CTCFP49711 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CTCFP49711 LINC02555-201ENST00000563933 1951 ntBASIC2.19□□□□□ -2.06
CTCFP49711 RNU1-62P-201ENST00000362599 164 ntBASIC2.19□□□□□ -2.06
CTCFP49711 RNU6-280P-201ENST00000364145 104 ntBASIC2.19□□□□□ -2.06
CTCFP49711 Y_RNA.354-201ENST00000365448 111 ntBASIC2.19□□□□□ -2.06
CTCFP49711 RNU6-1040P-201ENST00000383974 107 ntBASIC2.19□□□□□ -2.06
CTCFP49711 MIR598-201ENST00000384868 97 ntBASIC2.19□□□□□ -2.06
CTCFP49711 AC139712.2-201ENST00000424302 339 ntBASIC2.19□□□□□ -2.06
CTCFP49711 EIF1P2-201ENST00000428233 350 ntBASIC2.19□□□□□ -2.06
CTCFP49711 AL353689.1-201ENST00000438895 199 ntBASIC2.19□□□□□ -2.06
CTCFP49711 RPL23AP7-203ENST00000449021 469 ntBASIC2.19□□□□□ -2.06
CTCFP49711 U8.22-201ENST00000459141 133 ntBASIC2.19□□□□□ -2.06
CTCFP49711 AC091179.3-201ENST00000474761 144 ntBASIC2.19□□□□□ -2.06
CTCFP49711 HMGN2P9-201ENST00000476875 229 ntBASIC2.19□□□□□ -2.06
CTCFP49711 MRPS17P9-201ENST00000511924 393 ntBASIC2.19□□□□□ -2.06
CTCFP49711 Y_RNA.675-201ENST00000516389 149 ntBASIC2.19□□□□□ -2.06
CTCFP49711 RNU6-264P-201ENST00000517134 104 ntBASIC2.19□□□□□ -2.06
CTCFP49711 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.19□□□□□ -2.06
CTCFP49711 AC090617.3-201ENST00000573670 475 ntBASIC2.19□□□□□ -2.06
CTCFP49711 MIR5695-201ENST00000579717 85 ntBASIC2.19□□□□□ -2.06
CTCFP49711 AC125232.2-201ENST00000592457 143 ntBASIC2.19□□□□□ -2.06
CTCFP49711 AC008749.1-201ENST00000597650 306 ntBASIC2.19□□□□□ -2.06
CTCFP49711 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.19□□□□□ -2.06
CTCFP49711 AL590240.4-201ENST00000616908 390 ntBASIC2.19□□□□□ -2.06
CTCFP49711 AC126177.8-201ENST00000618339 1015 ntBASIC2.19□□□□□ -2.06
CTCFP49711 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
CTCFP49711 AC009487.4-201ENST00000624969 3585 ntBASIC2.19□□□□□ -2.06
CTCFP49711 RNU1-58P-201ENST00000362413 163 ntBASIC2.18□□□□□ -2.06
CTCFP49711 Y_RNA.187-201ENST00000363918 113 ntBASIC2.18□□□□□ -2.06
CTCFP49711 RNA5SP493-201ENST00000364115 91 ntBASIC2.18□□□□□ -2.06
CTCFP49711 RNU6-281P-201ENST00000384212 103 ntBASIC2.18□□□□□ -2.06
CTCFP49711 Y_RNA.557-201ENST00000384680 107 ntBASIC2.18□□□□□ -2.06
CTCFP49711 MIR586-201ENST00000385035 97 ntBASIC2.18□□□□□ -2.06
CTCFP49711 MIR625-201ENST00000385047 85 ntBASIC2.18□□□□□ -2.06
CTCFP49711 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.18□□□□□ -2.06
CTCFP49711 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.18□□□□□ -2.06
CTCFP49711 AC236972.2-201ENST00000434979 310 ntBASIC2.18□□□□□ -2.06
CTCFP49711 AC007395.1-201ENST00000451333 677 ntBASIC2.18□□□□□ -2.06
CTCFP49711 AL021397.1-201ENST00000451806 248 ntBASIC2.18□□□□□ -2.06
CTCFP49711 RNU1-131P-201ENST00000458943 161 ntBASIC2.18□□□□□ -2.06
CTCFP49711 RNU7-87P-201ENST00000459343 62 ntBASIC2.18□□□□□ -2.06
CTCFP49711 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.18□□□□□ -2.06
CTCFP49711 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.18□□□□□ -2.06
CTCFP49711 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.18□□□□□ -2.06
CTCFP49711 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms