Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC091179.3-201ENST00000474761 144 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC9P31274 RRN3P3-201ENST00000549207 578 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC9P31274 AC125232.2-201ENST00000592457 143 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 AC092447.9-201ENST00000603395 144 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 AC010999.1-201ENST00000611856 324 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 MIR8070-201ENST00000616510 88 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 Y_RNA.11-201ENST00000362375 109 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 Y_RNA.179-201ENST00000363844 90 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 RNU6-1305P-201ENST00000364353 104 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 RNU4-42P-201ENST00000364738 142 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 SNORD87-201ENST00000364849 89 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 SNORD31B-201ENST00000364977 69 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 SNORD42.2-201ENST00000365570 69 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 RNU6-281P-201ENST00000384212 103 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 RNU6-793P-201ENST00000384233 104 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 MIR628-201ENST00000385229 95 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 MIR1323-201ENST00000408090 73 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 RN7SKP101-201ENST00000411376 320 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 BX510359.4-201ENST00000423750 193 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.13□□□□□ -2.07
HOXC9P31274 EIF1P2-201ENST00000428233 350 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.13□□□□□ -2.07
HOXC9P31274 RNU7-193P-201ENST00000516723 65 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.13□□□□□ -2.07
HOXC9P31274 MIR4753-201ENST00000585119 83 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 MZT1P2-201ENST00000604387 248 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 AC006157.1-201ENST00000611750 366 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 uc_338.22-201ENST00000622722 187 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 AC022140.2-201ENST00000623500 188 ntBASIC2.13□□□□□ -2.07
HOXC9P31274 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXC9P31274 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
HOXC9P31274 RNU4-13P-201ENST00000364019 141 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 SNORD14D-201ENST00000384390 87 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 MIR1283-1-201ENST00000408494 87 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 SRIP3-201ENST00000413200 219 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 UBE2V1P7-201ENST00000446395 340 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 CHEK2P4-201ENST00000450340 246 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXC9P31274 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXC9P31274 RNU6-1153P-201ENST00000516760 105 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 AC006600.1-201ENST00000572529 153 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 SNORD53B-201ENST00000577887 78 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 MIR5694-201ENST00000581190 76 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 SNORD11B-201ENST00000607707 90 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 AC007485.1-201ENST00000616755 206 ntBASIC2.12□□□□□ -2.07
HOXC9P31274 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXC9P31274 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
HOXC9P31274 Y_RNA.31-201ENST00000362574 102 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 RNY1P10-201ENST00000363268 113 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 Y_RNA.132-201ENST00000363421 102 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 RNU5F-3P-201ENST00000363767 117 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 Y_RNA.252-201ENST00000364556 101 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 Y_RNA.415-201ENST00000384012 112 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 MIR144-201ENST00000384886 86 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXC9P31274 AL137792.2-201ENST00000443484 235 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 Y_RNA.639-201ENST00000458981 102 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 RNU6-344P-201ENST00000516635 111 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.11□□□□□ -2.07
HOXC9P31274 AC087441.2-201ENST00000529141 262 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 U2.1-201ENST00000618978 145 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 MTND5P35-201ENST00000557537 1720 ntBASIC2.11□□□□□ -2.07
HOXC9P31274 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXC9P31274 RNU1-62P-201ENST00000362599 164 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 Y_RNA.39-201ENST00000362620 98 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 RNU6-418P-201ENST00000384035 107 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 RNU6-474P-201ENST00000384243 107 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 RNY1P14-201ENST00000384426 108 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 MIR300-201ENST00000401138 83 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 AL355497.1-201ENST00000406262 551 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 AC123900.1-201ENST00000420390 96 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 AC139712.2-201ENST00000424302 339 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 AC016925.1-201ENST00000458303 298 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 Y_RNA.683-201ENST00000516508 93 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 Y_RNA.701-201ENST00000516812 110 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 IGLV3-17-201ENST00000519099 244 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 AC091144.1-201ENST00000519573 138 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 AC121758.2-201ENST00000553271 193 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 BX248123.2-201ENST00000606318 124 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC9P31274 AL078596.1-201ENST00000624856 447 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 AC138305.3-201ENST00000624988 240 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 MIR4272-201ENST00000635924 64 ntBASIC2.1□□□□□ -2.07
HOXC9P31274 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HOXC9P31274 RNU6-1301P-201ENST00000362724 104 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 Y_RNA.80-201ENST00000362996 102 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 Y_RNA.99-201ENST00000363138 105 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 Y_RNA.112-201ENST00000363250 102 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 Y_RNA.332-201ENST00000365271 113 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 Y_RNA.395-201ENST00000383945 109 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 RNU6-926P-201ENST00000384075 107 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 RNU6-318P-201ENST00000384283 103 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 Y_RNA.485-201ENST00000384395 102 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 MIR329-1-201ENST00000385028 80 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
HOXC9P31274 MIR1287-201ENST00000408492 90 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 RNA5SP504-201ENST00000410676 117 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 AC018865.2-201ENST00000423631 129 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms