Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXD3P31249 AC104389.3-201ENST00000445629 235 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 EEF1B2P7-201ENST00000451177 676 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 AC080013.2-201ENST00000460866 323 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 AC091959.1-201ENST00000495857 238 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXD3P31249 PRELID2P1-201ENST00000552837 301 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HOXD3P31249 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXD3P31249 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HOXD3P31249 MIR6715A-201ENST00000615929 79 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 U2.14-201ENST00000615943 113 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXD3P31249 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXD3P31249 AC093831.2-201ENST00000624393 3427 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXD3P31249 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
HOXD3P31249 RNU1-35P-201ENST00000362782 153 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 U3.8-201ENST00000363675 217 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 RNU6-418P-201ENST00000384035 107 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 MIR586-201ENST00000385035 97 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 HMGN2P35-201ENST00000412164 270 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 RNU7-57P-201ENST00000459540 60 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.17□□□□□ -2.06
HOXD3P31249 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.17□□□□□ -2.06
HOXD3P31249 AC018630.3-201ENST00000542637 96 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 AL355297.2-201ENST00000604792 129 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 RPL17P51-201ENST00000605218 238 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 AL449363.1-201ENST00000617815 186 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 AC008873.1-201ENST00000625051 138 ntBASIC2.17□□□□□ -2.06
HOXD3P31249 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXD3P31249 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
HOXD3P31249 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXD3P31249 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.16□□□□□ -2.06
HOXD3P31249 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.16□□□□□ -2.06
HOXD3P31249 SNORA25.1-201ENST00000362326 128 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 Y_RNA.136-201ENST00000363444 102 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 RNU6-1072P-201ENST00000384703 107 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 RNU6-443P-201ENST00000384780 107 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 SNORD58.1-201ENST00000391313 66 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 MIR1185-2-201ENST00000408687 86 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 SUMO1P4-201ENST00000429430 302 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 TRBV12-1-201ENST00000479785 344 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 SNORA27.4-201ENST00000516650 95 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 AC022616.8-201ENST00000533569 253 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 AC130289.1-201ENST00000577321 73 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 AC104984.5-201ENST00000586878 94 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 AC006380.1-201ENST00000603598 186 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 AC025754.2-201ENST00000606491 432 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 AC005828.6-201ENST00000606610 232 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 BX284668.6-201ENST00000606899 438 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 U6.115-201ENST00000636045 103 ntBASIC2.16□□□□□ -2.06
HOXD3P31249 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
HOXD3P31249 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
HOXD3P31249 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.15□□□□□ -2.06
HOXD3P31249 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.06
HOXD3P31249 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
HOXD3P31249 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXD3P31249 Y_RNA.122-201ENST00000363331 96 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 SNORD115-30-201ENST00000364117 82 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
HOXD3P31249 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXD3P31249 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXD3P31249 AC003685.2-201ENST00000422795 395 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXD3P31249 AP004217.1-201ENST00000480579 346 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 RN7SL499P-201ENST00000481141 276 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 AC018868.1-201ENST00000491307 315 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 RNU6-138P-201ENST00000515952 107 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 SNORD116-28-201ENST00000516123 91 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 RNU6-991P-201ENST00000516168 107 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 RNU6-191P-201ENST00000516295 94 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXD3P31249 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXD3P31249 MIR5194-201ENST00000582634 120 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXD3P31249 MIR4753-201ENST00000585119 83 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXD3P31249 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXD3P31249 AC037487.3-201ENST00000606668 112 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.15□□□□□ -2.07
HOXD3P31249 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HOXD3P31249 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXD3P31249 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HOXD3P31249 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HOXD3P31249 SNORA38-201ENST00000363946 132 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 Y_RNA.243-201ENST00000364481 109 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 Y_RNA.275-201ENST00000364726 110 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 SNORD31B-201ENST00000364977 69 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 RNU6-438P-201ENST00000365561 103 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 RNU6-975P-201ENST00000384296 105 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 RNU6-1289P-201ENST00000384431 106 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 Y_RNA.515-201ENST00000384535 112 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 MIR300-201ENST00000401138 83 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 AL031003.1-201ENST00000404229 172 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 RNU6-57P-201ENST00000411348 103 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 AL451074.5-201ENST00000415894 435 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 TOMM22P2-201ENST00000430735 237 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 MTND5P15-201ENST00000434246 349 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms