Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU6-702P-201ENST00000364982 107 ntBASIC2.74□□□□□ -1.97
SMARCA1P28370 Y_RNA.556-201ENST00000384677 113 ntBASIC2.74□□□□□ -1.97
SMARCA1P28370 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.74□□□□□ -1.97
SMARCA1P28370 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.74□□□□□ -1.97
SMARCA1P28370 AC018868.1-201ENST00000491307 315 ntBASIC2.74□□□□□ -1.97
SMARCA1P28370 RNU6-966P-201ENST00000516479 104 ntBASIC2.74□□□□□ -1.97
SMARCA1P28370 AC021269.2-201ENST00000532318 330 ntBASIC2.74□□□□□ -1.97
SMARCA1P28370 AC022616.8-201ENST00000533569 253 ntBASIC2.74□□□□□ -1.97
SMARCA1P28370 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.74□□□□□ -1.97
SMARCA1P28370 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.74□□□□□ -1.97
SMARCA1P28370 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.74□□□□□ -1.97
SMARCA1P28370 AC046143.2-201ENST00000609789 160 ntBASIC2.74□□□□□ -1.97
SMARCA1P28370 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SMARCA1P28370 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.73□□□□□ -1.97
SMARCA1P28370 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.73□□□□□ -1.97
SMARCA1P28370 MIR21-201ENST00000362134 72 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 SNORD113-8-201ENST00000363497 74 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 RNU6-1305P-201ENST00000364353 104 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 Y_RNA.286-201ENST00000364813 102 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 Y_RNA.570-201ENST00000384750 101 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 MIR1302-6-201ENST00000408466 90 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 Y_RNA.602-201ENST00000410535 92 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 RNU6-1203P-201ENST00000410703 110 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.73□□□□□ -1.97
SMARCA1P28370 AC009238.1-201ENST00000442165 424 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 AC009237.6-201ENST00000446969 424 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 HMGN2P18-201ENST00000450680 270 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.73□□□□□ -1.97
SMARCA1P28370 RNU6-496P-201ENST00000516145 99 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 RNU6-107P-201ENST00000516643 102 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.73□□□□□ -1.97
SMARCA1P28370 AC005176.2-201ENST00000596933 147 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 AC008873.1-201ENST00000625051 138 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.73□□□□□ -1.97
SMARCA1P28370 AC131280.1-202ENST00000624067 4211 ntBASIC2.73□□□□□ -1.97
SMARCA1P28370 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.72□□□□□ -1.97
SMARCA1P28370 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
SMARCA1P28370 RNA5SP289-201ENST00000362332 137 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 Y_RNA.101-201ENST00000363154 102 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 SNORD114-30-201ENST00000364448 72 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 MIR548B-201ENST00000385247 97 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
SMARCA1P28370 Y_RNA.581-201ENST00000391017 97 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 RNU4-30P-201ENST00000410245 143 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 RNU5A-5P-201ENST00000411054 116 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 RNA5SP508-201ENST00000411327 119 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 OOSP1P1-201ENST00000423265 274 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 AL139109.1-201ENST00000455491 297 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.72□□□□□ -1.97
SMARCA1P28370 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.72□□□□□ -1.97
SMARCA1P28370 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.72□□□□□ -1.97
SMARCA1P28370 PRELID2P1-201ENST00000552837 301 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 AC121758.2-201ENST00000553271 193 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.72□□□□□ -1.97
SMARCA1P28370 AC004467.1-201ENST00000615678 330 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 AL590808.1-201ENST00000618696 141 ntBASIC2.72□□□□□ -1.97
SMARCA1P28370 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.72□□□□□ -1.97
SMARCA1P28370 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SMARCA1P28370 MIR410-201ENST00000362222 80 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 RNU6-743P-201ENST00000364151 106 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 Y_RNA.230-201ENST00000364348 109 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 RNU6-1175P-201ENST00000365200 107 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 DEFA7P-201ENST00000382676 285 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 Y_RNA.541-201ENST00000384640 113 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 MIR586-201ENST00000385035 97 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 MIR1283-1-201ENST00000408494 87 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 HMGN2P9-201ENST00000476875 229 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 TRBVB-201ENST00000477100 408 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.71□□□□□ -1.98
SMARCA1P28370 CYCSP26-201ENST00000534107 320 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 AL109918.3-201ENST00000603072 338 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 AC011373.1-201ENST00000607270 237 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 AC091932.3-201ENST00000624223 323 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 MIR3674-201ENST00000636576 68 ntBASIC2.71□□□□□ -1.98
SMARCA1P28370 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.7□□□□□ -1.98
SMARCA1P28370 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SMARCA1P28370 U3.8-201ENST00000363675 217 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 RNU6-454P-201ENST00000364292 107 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 SNORD31B-201ENST00000364977 69 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 SNORA25B-201ENST00000365507 128 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 RNU6-1264P-201ENST00000383891 107 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 RNU1-52P-201ENST00000384190 164 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 RNU6-1199P-201ENST00000411249 104 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.7□□□□□ -1.98
SMARCA1P28370 AC018634.1-201ENST00000437554 401 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 HSPE1P25-201ENST00000455484 251 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 SNORD127-201ENST00000458892 86 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 AC107222.1-201ENST00000510899 637 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 SNORA31.11-201ENST00000516528 139 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 RNU7-110P-201ENST00000516891 62 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.7□□□□□ -1.98
SMARCA1P28370 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.7□□□□□ -1.98
SMARCA1P28370 AC022441.3-201ENST00000605737 136 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 AP001282.2-201ENST00000616149 309 ntBASIC2.7□□□□□ -1.98
SMARCA1P28370 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
SMARCA1P28370 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SMARCA1P28370 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.69□□□□□ -1.98
SMARCA1P28370 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms