Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU6-273P-201ENST00000516937 96 ntBASIC0.89□□□□□ -2.27
COL5A3P25940 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.89□□□□□ -2.27
COL5A3P25940 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.89□□□□□ -2.27
COL5A3P25940 AC004812.1-201ENST00000540773 146 ntBASIC0.89□□□□□ -2.27
COL5A3P25940 EIF4A1P12-201ENST00000551910 141 ntBASIC0.89□□□□□ -2.27
COL5A3P25940 MIR3942-201ENST00000585264 109 ntBASIC0.89□□□□□ -2.27
COL5A3P25940 CYP2C61P-201ENST00000604072 290 ntBASIC0.89□□□□□ -2.27
COL5A3P25940 AC010900.2-201ENST00000604508 210 ntBASIC0.89□□□□□ -2.27
COL5A3P25940 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
COL5A3P25940 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.89□□□□□ -2.27
COL5A3P25940 AC009248.2-201ENST00000619826 254 ntBASIC0.89□□□□□ -2.27
COL5A3P25940 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.89□□□□□ -2.27
COL5A3P25940 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.89□□□□□ -2.27
COL5A3P25940 MTND4P5-201ENST00000435821 1374 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 Y_RNA.136-201ENST00000363444 102 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 SNORD14D-201ENST00000384390 87 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 RNU6-1148P-201ENST00000410992 104 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 AL590135.1-201ENST00000422215 156 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 AC019205.3-201ENST00000424573 156 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 USP9YP28-201ENST00000435142 589 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.88□□□□□ -2.27
COL5A3P25940 AC016700.2-201ENST00000446011 156 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 NFU1P2-201ENST00000448700 469 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 AC015911.1-201ENST00000495111 156 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 MTCO2P30-201ENST00000503662 364 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 AC005741.1-201ENST00000511094 432 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 RNU6-351P-201ENST00000516097 100 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 RNU6-864P-201ENST00000516256 108 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 SNORA44.1-201ENST00000517031 108 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.88□□□□□ -2.27
COL5A3P25940 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.88□□□□□ -2.27
COL5A3P25940 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.88□□□□□ -2.27
COL5A3P25940 AC091135.1-201ENST00000585943 307 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 AL138726.1-201ENST00000614873 333 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.88□□□□□ -2.27
COL5A3P25940 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.87□□□□□ -2.27
COL5A3P25940 Y_RNA.123-201ENST00000363338 102 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 Y_RNA.212-201ENST00000364177 102 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 Y_RNA.450-201ENST00000384198 113 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 SNORA36A-201ENST00000384221 132 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 Y_RNA.505-201ENST00000384489 102 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 MTCYBP2-201ENST00000407745 171 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 RN7SKP61-201ENST00000410642 295 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 MTND3P8-201ENST00000412909 339 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AC074085.1-201ENST00000413598 418 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AL590632.1-201ENST00000424289 371 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.87□□□□□ -2.27
COL5A3P25940 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.87□□□□□ -2.27
COL5A3P25940 RNU6-1098P-201ENST00000516772 96 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 RNA5SP54-201ENST00000516951 92 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.87□□□□□ -2.27
COL5A3P25940 AC016256.1-201ENST00000547971 354 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.87□□□□□ -2.27
COL5A3P25940 MIR4273-201ENST00000582824 84 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 SNRPGP20-201ENST00000604477 205 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AL034555.1-201ENST00000604816 211 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.87□□□□□ -2.27
COL5A3P25940 AC009229.3-201ENST00000608056 282 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AC122108.2-201ENST00000611946 526 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 MIR6128-201ENST00000615528 109 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 AC100810.6-201ENST00000638068 285 ntBASIC0.87□□□□□ -2.27
COL5A3P25940 RNU6-545P-201ENST00000362681 104 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 SNORD115-3-201ENST00000363100 82 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 Y_RNA.412-201ENST00000384001 104 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 SNORA8-201ENST00000384574 139 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 MIR521-1-201ENST00000384902 87 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 MIR32-201ENST00000384965 70 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6-360P-201ENST00000390944 104 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6-1093P-201ENST00000391194 107 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 FGF7P6-202ENST00000451282 293 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 OR2AQ1P-201ENST00000451972 200 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNA5SP57-201ENST00000459463 123 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 OR2A41P-201ENST00000473586 105 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.86□□□□□ -2.27
COL5A3P25940 AC117454.1-201ENST00000491120 168 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC145146.1-201ENST00000496370 254 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 MTCO1P29-201ENST00000496868 288 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6-1198P-201ENST00000516904 67 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6-1314P-201ENST00000517139 104 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6-667P-201ENST00000517186 102 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNA5SP454-201ENST00000517231 127 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC034114.1-201ENST00000520293 285 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC018630.3-201ENST00000542637 96 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.86□□□□□ -2.27
COL5A3P25940 AC013244.2-201ENST00000603396 103 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC009994.1-201ENST00000606889 253 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 FAM157A-202ENST00000615155 405 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 TCL6_2.1-201ENST00000615162 119 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 AC137590.2-201ENST00000619709 240 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 CASC19-280ENST00000642102 1351 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6-562P-201ENST00000362731 107 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 Y_RNA.339-201ENST00000365325 102 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNU6-1286P-201ENST00000383871 107 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 MIR549A-201ENST00000385268 96 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
COL5A3P25940 AL357139.1-201ENST00000407792 426 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 MIR1265-201ENST00000408444 86 ntBASIC0.86□□□□□ -2.27
COL5A3P25940 RNA5SP494-201ENST00000410653 129 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms