Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.86□□□□□ -1.79
RFX1P22670 RPL23AP58-201ENST00000440453 469 ntBASIC3.86□□□□□ -1.79
RFX1P22670 RNU7-170P-201ENST00000459303 61 ntBASIC3.86□□□□□ -1.79
RFX1P22670 AC008155.2-201ENST00000464337 397 ntBASIC3.86□□□□□ -1.79
RFX1P22670 AC010531.2-201ENST00000465012 153 ntBASIC3.86□□□□□ -1.79
RFX1P22670 PHBP14-201ENST00000512887 367 ntBASIC3.86□□□□□ -1.79
RFX1P22670 MIR4724-201ENST00000579485 89 ntBASIC3.86□□□□□ -1.79
RFX1P22670 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.86□□□□□ -1.79
RFX1P22670 AC005972.2-201ENST00000604690 348 ntBASIC3.86□□□□□ -1.79
RFX1P22670 AC110741.2-201ENST00000605278 268 ntBASIC3.86□□□□□ -1.79
RFX1P22670 MIR7851-201ENST00000610611 160 ntBASIC3.86□□□□□ -1.79
RFX1P22670 AC013412.1-201ENST00000610687 192 ntBASIC3.86□□□□□ -1.79
RFX1P22670 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.86□□□□□ -1.79
RFX1P22670 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
RFX1P22670 CENPCP1-201ENST00000533085 2578 ntBASIC3.85□□□□□ -1.79
RFX1P22670 Y_RNA.400-201ENST00000383963 111 ntBASIC3.85□□□□□ -1.79
RFX1P22670 RNU6-220P-201ENST00000390919 107 ntBASIC3.85□□□□□ -1.79
RFX1P22670 SNORA36B-201ENST00000410438 131 ntBASIC3.85□□□□□ -1.79
RFX1P22670 AC016909.1-201ENST00000415916 166 ntBASIC3.85□□□□□ -1.79
RFX1P22670 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.85□□□□□ -1.79
RFX1P22670 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.85□□□□□ -1.79
RFX1P22670 RN7SL807P-201ENST00000470923 297 ntBASIC3.85□□□□□ -1.79
RFX1P22670 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.85□□□□□ -1.79
RFX1P22670 RNU7-121P-201ENST00000516604 62 ntBASIC3.85□□□□□ -1.79
RFX1P22670 AC027419.1-201ENST00000522976 328 ntBASIC3.85□□□□□ -1.79
RFX1P22670 PRELID2P1-201ENST00000552837 301 ntBASIC3.85□□□□□ -1.79
RFX1P22670 AC093732.2-201ENST00000607950 274 ntBASIC3.85□□□□□ -1.79
RFX1P22670 AC022149.2-201ENST00000621061 203 ntBASIC3.85□□□□□ -1.79
RFX1P22670 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.85□□□□□ -1.79
RFX1P22670 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
RFX1P22670 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
RFX1P22670 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
RFX1P22670 Y_RNA.500-201ENST00000384466 111 ntBASIC3.84□□□□□ -1.79
RFX1P22670 AL159169.1-201ENST00000421119 127 ntBASIC3.84□□□□□ -1.79
RFX1P22670 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.84□□□□□ -1.79
RFX1P22670 AC109810.1-201ENST00000534066 224 ntBASIC3.84□□□□□ -1.79
RFX1P22670 MIR4425-201ENST00000580572 84 ntBASIC3.84□□□□□ -1.79
RFX1P22670 AL355297.2-201ENST00000604792 129 ntBASIC3.84□□□□□ -1.79
RFX1P22670 AC138915.1-201ENST00000565427 1685 ntBASIC3.84□□□□□ -1.8
RFX1P22670 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.83□□□□□ -1.8
RFX1P22670 TNPO1P3-201ENST00000436471 2662 ntBASIC3.83□□□□□ -1.8
RFX1P22670 AL356292.1-201ENST00000283110 373 ntBASIC3.83□□□□□ -1.8
RFX1P22670 RNU6-461P-201ENST00000364195 107 ntBASIC3.83□□□□□ -1.8
RFX1P22670 RNU6-117P-201ENST00000365415 107 ntBASIC3.83□□□□□ -1.8
RFX1P22670 RNU6-81P-201ENST00000365608 104 ntBASIC3.83□□□□□ -1.8
RFX1P22670 MIR490-201ENST00000384865 128 ntBASIC3.83□□□□□ -1.8
RFX1P22670 AC104332.2-201ENST00000429959 156 ntBASIC3.83□□□□□ -1.8
RFX1P22670 AC245047.8-201ENST00000456455 284 ntBASIC3.83□□□□□ -1.8
RFX1P22670 SNORA4.4-201ENST00000515921 135 ntBASIC3.83□□□□□ -1.8
RFX1P22670 RNU6-1007P-201ENST00000516586 107 ntBASIC3.83□□□□□ -1.8
RFX1P22670 AC026333.2-201ENST00000542164 106 ntBASIC3.83□□□□□ -1.8
RFX1P22670 POLR3GP1-201ENST00000594073 261 ntBASIC3.83□□□□□ -1.8
RFX1P22670 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.83□□□□□ -1.8
RFX1P22670 AC009487.2-201ENST00000420969 6821 ntBASIC3.83□□□□□ -1.8
RFX1P22670 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
RFX1P22670 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
RFX1P22670 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
RFX1P22670 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.82□□□□□ -1.8
RFX1P22670 MIR367-201ENST00000362299 68 ntBASIC3.82□□□□□ -1.8
RFX1P22670 Y_RNA.229-201ENST00000364347 113 ntBASIC3.82□□□□□ -1.8
RFX1P22670 Y_RNA.343-201ENST00000365354 112 ntBASIC3.82□□□□□ -1.8
RFX1P22670 RNU6-383P-201ENST00000410864 94 ntBASIC3.82□□□□□ -1.8
RFX1P22670 RNA5SP120-201ENST00000410900 112 ntBASIC3.82□□□□□ -1.8
RFX1P22670 AL357552.1-201ENST00000445254 415 ntBASIC3.82□□□□□ -1.8
RFX1P22670 AP001486.1-201ENST00000463339 476 ntBASIC3.82□□□□□ -1.8
RFX1P22670 AL049873.1-201ENST00000480540 376 ntBASIC3.82□□□□□ -1.8
RFX1P22670 RNU6-856P-201ENST00000516959 98 ntBASIC3.82□□□□□ -1.8
RFX1P22670 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.82□□□□□ -1.8
RFX1P22670 AC127455.1-201ENST00000565496 145 ntBASIC3.82□□□□□ -1.8
RFX1P22670 AL449363.1-201ENST00000617815 186 ntBASIC3.82□□□□□ -1.8
RFX1P22670 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
RFX1P22670 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
RFX1P22670 Y_RNA.488-201ENST00000384403 102 ntBASIC3.81□□□□□ -1.8
RFX1P22670 RNU6-1228P-201ENST00000391014 107 ntBASIC3.81□□□□□ -1.8
RFX1P22670 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.81□□□□□ -1.8
RFX1P22670 RNU6-63P-201ENST00000516690 95 ntBASIC3.81□□□□□ -1.8
RFX1P22670 AC090616.3-201ENST00000582184 217 ntBASIC3.81□□□□□ -1.8
RFX1P22670 RMST_8.1-201ENST00000610287 165 ntBASIC3.81□□□□□ -1.8
RFX1P22670 U7.8-201ENST00000619968 63 ntBASIC3.81□□□□□ -1.8
RFX1P22670 Y_RNA.778-201ENST00000620203 90 ntBASIC3.81□□□□□ -1.8
RFX1P22670 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.81□□□□□ -1.8
RFX1P22670 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
RFX1P22670 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
RFX1P22670 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
RFX1P22670 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
RFX1P22670 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
RFX1P22670 RNU6-743P-201ENST00000364151 106 ntBASIC3.8□□□□□ -1.8
RFX1P22670 Y_RNA.215-201ENST00000364204 112 ntBASIC3.8□□□□□ -1.8
RFX1P22670 RNY3P5-201ENST00000384127 102 ntBASIC3.8□□□□□ -1.8
RFX1P22670 MT-TT-201ENST00000387460 66 ntBASIC3.8□□□□□ -1.8
RFX1P22670 Z98941.1-201ENST00000407764 100 ntBASIC3.8□□□□□ -1.8
RFX1P22670 MTATP6P29-201ENST00000415057 132 ntBASIC3.8□□□□□ -1.8
RFX1P22670 AL135786.1-201ENST00000415892 214 ntBASIC3.8□□□□□ -1.8
RFX1P22670 AC025750.2-201ENST00000442609 450 ntBASIC3.8□□□□□ -1.8
RFX1P22670 AC010409.1-201ENST00000487382 476 ntBASIC3.8□□□□□ -1.8
RFX1P22670 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.8□□□□□ -1.8
RFX1P22670 SNORD116-25-201ENST00000516517 92 ntBASIC3.8□□□□□ -1.8
RFX1P22670 SNORA70.19-201ENST00000516717 90 ntBASIC3.8□□□□□ -1.8
RFX1P22670 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.8□□□□□ -1.8
RFX1P22670 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms