Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.269-201ENST00000364685 89 ntBASIC1.46□□□□□ -2.18
SDC3O75056 RNU6-541P-201ENST00000384709 110 ntBASIC1.46□□□□□ -2.18
SDC3O75056 MIR1304-201ENST00000408243 91 ntBASIC1.46□□□□□ -2.18
SDC3O75056 AC074085.1-201ENST00000413598 418 ntBASIC1.46□□□□□ -2.18
SDC3O75056 USMG5P1-201ENST00000425964 177 ntBASIC1.46□□□□□ -2.18
SDC3O75056 HSPE1P9-201ENST00000440046 311 ntBASIC1.46□□□□□ -2.18
SDC3O75056 HSPE1P24-201ENST00000450782 238 ntBASIC1.46□□□□□ -2.18
SDC3O75056 RNU1-98P-201ENST00000458992 160 ntBASIC1.46□□□□□ -2.18
SDC3O75056 RNU6-221P-201ENST00000459541 99 ntBASIC1.46□□□□□ -2.18
SDC3O75056 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.46□□□□□ -2.18
SDC3O75056 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.46□□□□□ -2.18
SDC3O75056 AC084364.2-201ENST00000546924 395 ntBASIC1.46□□□□□ -2.18
SDC3O75056 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.46□□□□□ -2.18
SDC3O75056 AP001485.1-201ENST00000604799 199 ntBASIC1.46□□□□□ -2.18
SDC3O75056 AC126177.8-201ENST00000618339 1015 ntBASIC1.46□□□□□ -2.18
SDC3O75056 snoZ196.1-201ENST00000625269 89 ntBASIC1.46□□□□□ -2.18
SDC3O75056 U3.8-201ENST00000363675 217 ntBASIC1.45□□□□□ -2.18
SDC3O75056 Y_RNA.405-201ENST00000383979 100 ntBASIC1.45□□□□□ -2.18
SDC3O75056 Y_RNA.451-201ENST00000384200 100 ntBASIC1.45□□□□□ -2.18
SDC3O75056 Y_RNA.524-201ENST00000384564 100 ntBASIC1.45□□□□□ -2.18
SDC3O75056 Y_RNA.561-201ENST00000384694 100 ntBASIC1.45□□□□□ -2.18
SDC3O75056 MIR515-2-201ENST00000384883 83 ntBASIC1.45□□□□□ -2.18
SDC3O75056 MIR515-1-201ENST00000384884 83 ntBASIC1.45□□□□□ -2.18
SDC3O75056 RNU6-360P-201ENST00000390944 104 ntBASIC1.45□□□□□ -2.18
SDC3O75056 RNU1-139P-201ENST00000391307 165 ntBASIC1.45□□□□□ -2.18
SDC3O75056 MIR548F5-201ENST00000408421 86 ntBASIC1.45□□□□□ -2.18
SDC3O75056 AC069257.2-201ENST00000441819 155 ntBASIC1.45□□□□□ -2.18
SDC3O75056 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.45□□□□□ -2.18
SDC3O75056 AC093303.1-201ENST00000514549 295 ntBASIC1.45□□□□□ -2.18
SDC3O75056 RNU6-1146P-201ENST00000516282 102 ntBASIC1.45□□□□□ -2.18
SDC3O75056 CBX3P8-201ENST00000532412 525 ntBASIC1.45□□□□□ -2.18
SDC3O75056 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.45□□□□□ -2.18
SDC3O75056 MIR5701-3-201ENST00000578890 82 ntBASIC1.45□□□□□ -2.18
SDC3O75056 MIR5701-1-201ENST00000585138 82 ntBASIC1.45□□□□□ -2.18
SDC3O75056 MIR5701-2-201ENST00000615634 82 ntBASIC1.45□□□□□ -2.18
SDC3O75056 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.45□□□□□ -2.18
SDC3O75056 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SDC3O75056 Y_RNA.118-201ENST00000363300 101 ntBASIC1.44□□□□□ -2.18
SDC3O75056 Y_RNA.279-201ENST00000364763 95 ntBASIC1.44□□□□□ -2.18
SDC3O75056 SNORA72.2-201ENST00000365028 127 ntBASIC1.44□□□□□ -2.18
SDC3O75056 MIR10B-201ENST00000385011 110 ntBASIC1.44□□□□□ -2.18
SDC3O75056 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SDC3O75056 RNU6-57P-201ENST00000411348 103 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AC016909.1-201ENST00000415916 166 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AC007098.1-201ENST00000420122 367 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AC008134.1-201ENST00000420943 193 ntBASIC1.44□□□□□ -2.18
SDC3O75056 MTCO3P29-201ENST00000432119 779 ntBASIC1.44□□□□□ -2.18
SDC3O75056 RPS3AP52-201ENST00000435639 297 ntBASIC1.44□□□□□ -2.18
SDC3O75056 HMGN2P34-201ENST00000437647 269 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AP000870.1-201ENST00000472927 406 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AC091179.3-201ENST00000474761 144 ntBASIC1.44□□□□□ -2.18
SDC3O75056 RNU1-117P-201ENST00000517041 158 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AC025647.1-201ENST00000517879 253 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AK6P2-201ENST00000549020 471 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.44□□□□□ -2.18
SDC3O75056 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.44□□□□□ -2.18
SDC3O75056 UBL5P4-201ENST00000562584 236 ntBASIC1.44□□□□□ -2.18
SDC3O75056 MIR4422-201ENST00000581938 83 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AC100812.1-201ENST00000607622 580 ntBASIC1.44□□□□□ -2.18
SDC3O75056 MIR8063-201ENST00000621930 81 ntBASIC1.44□□□□□ -2.18
SDC3O75056 AC100821.1-201ENST00000523153 2479 ntBASIC1.43□□□□□ -2.18
SDC3O75056 Y_RNA.248-201ENST00000364501 109 ntBASIC1.43□□□□□ -2.18
SDC3O75056 RNU6-767P-201ENST00000384132 107 ntBASIC1.43□□□□□ -2.18
SDC3O75056 RNU6-793P-201ENST00000384233 104 ntBASIC1.43□□□□□ -2.18
SDC3O75056 Y_RNA.482-201ENST00000384377 111 ntBASIC1.43□□□□□ -2.18
SDC3O75056 MIR548B-201ENST00000385247 97 ntBASIC1.43□□□□□ -2.18
SDC3O75056 MIR1185-2-201ENST00000408687 86 ntBASIC1.43□□□□□ -2.18
SDC3O75056 Y_RNA.594-201ENST00000410373 140 ntBASIC1.43□□□□□ -2.18
SDC3O75056 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.43□□□□□ -2.18
SDC3O75056 MTND3P23-201ENST00000431980 347 ntBASIC1.43□□□□□ -2.18
SDC3O75056 FTH1P12-201ENST00000432137 551 ntBASIC1.43□□□□□ -2.18
SDC3O75056 AC107399.1-201ENST00000451226 265 ntBASIC1.43□□□□□ -2.18
SDC3O75056 AC023790.1-201ENST00000482174 347 ntBASIC1.43□□□□□ -2.18
SDC3O75056 AC082651.2-201ENST00000496833 166 ntBASIC1.43□□□□□ -2.18
SDC3O75056 RNU6-1114P-201ENST00000516022 107 ntBASIC1.43□□□□□ -2.18
SDC3O75056 RNA5SP481-201ENST00000516814 122 ntBASIC1.43□□□□□ -2.18
SDC3O75056 Y_RNA.706-201ENST00000516933 99 ntBASIC1.43□□□□□ -2.18
SDC3O75056 RNA5SP437-201ENST00000517249 129 ntBASIC1.43□□□□□ -2.18
SDC3O75056 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.43□□□□□ -2.18
SDC3O75056 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.43□□□□□ -2.18
SDC3O75056 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.43□□□□□ -2.18
SDC3O75056 AL121579.1-201ENST00000555129 305 ntBASIC1.43□□□□□ -2.18
SDC3O75056 AL355802.3-201ENST00000607571 545 ntBASIC1.43□□□□□ -2.18
SDC3O75056 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
SDC3O75056 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SDC3O75056 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SDC3O75056 Y_RNA.166-201ENST00000363730 102 ntBASIC1.42□□□□□ -2.18
SDC3O75056 Y_RNA.179-201ENST00000363844 90 ntBASIC1.42□□□□□ -2.18
SDC3O75056 Y_RNA.224-201ENST00000364308 111 ntBASIC1.42□□□□□ -2.18
SDC3O75056 Y_RNA.287-201ENST00000364853 94 ntBASIC1.42□□□□□ -2.18
SDC3O75056 RNU6-392P-201ENST00000364926 101 ntBASIC1.42□□□□□ -2.18
SDC3O75056 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.42□□□□□ -2.18
SDC3O75056 RNU1-78P-201ENST00000391248 165 ntBASIC1.42□□□□□ -2.18
SDC3O75056 RNU6-1050P-201ENST00000410388 107 ntBASIC1.42□□□□□ -2.18
SDC3O75056 JTBP1-201ENST00000441314 247 ntBASIC1.42□□□□□ -2.18
SDC3O75056 RPL26P26-201ENST00000480251 434 ntBASIC1.42□□□□□ -2.18
SDC3O75056 AC116353.2-201ENST00000505332 712 ntBASIC1.42□□□□□ -2.18
SDC3O75056 Y_RNA.670-201ENST00000516255 105 ntBASIC1.42□□□□□ -2.18
SDC3O75056 Y_RNA.708-201ENST00000516950 96 ntBASIC1.42□□□□□ -2.18
SDC3O75056 AC105029.1-201ENST00000520250 669 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 198.3 ms