Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 AL139156.1-201ENST00000412785 841 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 AL445646.1-201ENST00000431784 216 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 AC099677.2-201ENST00000436385 175 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 RPL23AP6-201ENST00000446637 472 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 SUB1P3-201ENST00000564581 315 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 AC005786.1-201ENST00000588553 154 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 AL133255.1-201ENST00000606374 441 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 AC104985.2-201ENST00000620598 500 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 MTND5P10-201ENST00000603719 1809 ntBASIC1.66□□□□□ -2.14
NKX6-3A6NJ46 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.14
NKX6-3A6NJ46 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
NKX6-3A6NJ46 RNU4-79P-201ENST00000362764 141 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 RNU6-490P-201ENST00000362985 107 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.187-201ENST00000363918 113 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 RNU1-96P-201ENST00000364163 162 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 RNU6-417P-201ENST00000384712 107 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 SNORA48.1-201ENST00000390879 135 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 MIR1253-201ENST00000408273 105 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.592-201ENST00000410274 109 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 RNU2-2P-201ENST00000410396 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 MTND2P29-201ENST00000438595 412 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 UBE2V1P7-201ENST00000446395 340 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 RNU7-4P-201ENST00000516961 62 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 MIR5002-201ENST00000584713 97 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 LARP7P1-201ENST00000605576 316 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.15-201ENST00000611544 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.16-201ENST00000613119 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.12-201ENST00000613778 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.20-201ENST00000613956 192 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 AL773524.1-201ENST00000614065 229 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.9-201ENST00000615427 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.11-201ENST00000616345 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.2-201ENST00000616535 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.3-201ENST00000617785 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.19-201ENST00000618602 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 RNU2-1-201ENST00000618664 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.6-201ENST00000619225 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.5-201ENST00000619465 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U2.10-201ENST00000620268 191 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 U1.36-201ENST00000620684 176 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.65□□□□□ -2.15
NKX6-3A6NJ46 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 SNORA33-201ENST00000363664 130 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 MIR504-201ENST00000385065 83 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 RNA5SP489-201ENST00000410986 109 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 AC016909.1-201ENST00000415916 166 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 AL158823.1-201ENST00000418441 478 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 AC027575.1-201ENST00000481064 460 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 RNU2-34P-201ENST00000516534 121 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 AL117336.2-201ENST00000602435 335 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.64□□□□□ -2.15
NKX6-3A6NJ46 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 U3.8-201ENST00000363675 217 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 RNU6-708P-201ENST00000384217 107 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.463-201ENST00000384271 102 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.498-201ENST00000384460 102 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 SNORA8-201ENST00000384574 139 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 MIR628-201ENST00000385229 95 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 SNORD12B-201ENST00000410433 91 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.604-201ENST00000410574 102 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 AC244636.1-201ENST00000421152 228 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 AF228730.4-201ENST00000421457 183 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 AL445685.2-201ENST00000422551 342 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 MTND4P28-201ENST00000426217 387 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 AC025647.1-201ENST00000517879 253 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 AC144568.1-201ENST00000520139 137 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 MIR3122-201ENST00000577243 73 ntBASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
NKX6-3A6NJ46 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 RNU6-1301P-201ENST00000362724 104 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.813-201ENST00000364639 102 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.315-201ENST00000365117 102 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.428-201ENST00000384078 102 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 RNU6-1145P-201ENST00000384246 107 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 MIR1289-2-201ENST00000408360 111 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 MIR1185-2-201ENST00000408687 86 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 AC022028.1-201ENST00000412054 408 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 CHEK2P4-201ENST00000450340 246 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 PCNPP5-201ENST00000452246 481 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 RNU6-221P-201ENST00000459541 99 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 SNORA40.9-201ENST00000515895 93 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 SNORD116.3-201ENST00000517176 78 ntBASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 AC011476.5-201ENST00000615594 130 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms