Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC069257.2-201ENST00000441819 155 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 HMGN2P9-201ENST00000476875 229 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.691-201ENST00000516611 103 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-856P-201ENST00000516959 98 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 SNRPGP19-201ENST00000603826 189 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR8074-201ENST00000615081 81 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 AC099654.14-201ENST00000638599 341 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 MTND4P12-201ENST00000498999 1377 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-1283P-201ENST00000365314 105 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.473-201ENST00000384333 102 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.508-201ENST00000384502 114 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU2-20P-201ENST00000410425 191 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 USMG5P1-201ENST00000425964 177 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 ATP5J2P3-201ENST00000451550 258 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 AC116353.2-201ENST00000505332 712 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 AC103851.1-201ENST00000506833 274 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 AC025465.3-201ENST00000510570 311 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 SNORA25.14-201ENST00000516481 132 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 SNORA20.3-201ENST00000516880 132 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.708-201ENST00000516950 96 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 AC134698.4-201ENST00000523451 826 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 DNAJC19P9-201ENST00000555084 351 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR5701-3-201ENST00000578890 82 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR5701-1-201ENST00000585138 82 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 uc_338.5-201ENST00000611839 155 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 AC083806.3-201ENST00000614016 455 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR5701-2-201ENST00000615634 82 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 AC008873.1-201ENST00000625051 138 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.73□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.2-201ENST00000362330 96 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU1-62P-201ENST00000362599 164 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-280P-201ENST00000364145 104 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.796-201ENST00000364268 102 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-1305P-201ENST00000364353 104 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.269-201ENST00000364685 89 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.799-201ENST00000364992 102 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 SNORA25.9-201ENST00000365087 128 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 SNORD81.2-201ENST00000365153 76 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-1235P-201ENST00000384559 107 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 MTCO3P29-201ENST00000432119 779 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-498P-201ENST00000459468 107 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 RPL36AP21-201ENST00000490372 323 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 AC069114.2-201ENST00000604699 304 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 SNORD11B-201ENST00000607707 90 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 AC009229.3-201ENST00000608056 282 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 AL512598.1-201ENST00000610158 273 ntBASIC1.72□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-873P-201ENST00000363833 107 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR520A-201ENST00000384862 85 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-360P-201ENST00000390944 104 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 RNA5SP504-201ENST00000410676 117 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 AC060773.1-201ENST00000421698 310 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 AC016717.1-201ENST00000448918 286 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 MTND3P10-201ENST00000450967 341 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 RPS29P11-201ENST00000496507 171 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 HMGN1P12-201ENST00000499125 195 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 UBL5P4-201ENST00000562584 236 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR5094-201ENST00000578766 85 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 AL355802.3-201ENST00000607571 545 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 AC100812.1-201ENST00000607622 580 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 AC005014.2-201ENST00000607795 599 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 AC099654.5-201ENST00000636479 350 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 TPTEP1-208ENST00000636884 213 ntBASIC1.71□□□□□ -2.14
PCDHGA1Q9Y5H4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-112P-201ENST00000363599 104 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-414P-201ENST00000363705 104 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU5F-3P-201ENST00000363767 117 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-1019P-201ENST00000364424 107 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 Y_RNA.390-201ENST00000383932 102 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 AC099677.2-201ENST00000436385 175 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU7-57P-201ENST00000459540 60 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 AP000870.1-201ENST00000472927 406 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 RPL7P42-201ENST00000481005 679 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 RNA5SP481-201ENST00000516814 122 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 Y_RNA.706-201ENST00000516933 99 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 AL121579.1-201ENST00000555129 305 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR8081-201ENST00000611533 95 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 AL078596.1-201ENST00000624856 447 ntBASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
PCDHGA1Q9Y5H4 Y_RNA.404-201ENST00000383978 102 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR10B-201ENST00000385011 110 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms