Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 MIR7157-201ENST00000635801 60 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 SNORD115-8-201ENST00000363856 82 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 SNORD32B-201ENST00000364460 84 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 SNORA16B-201ENST00000364674 135 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 SNORD115-38-201ENST00000365037 82 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.358-201ENST00000365491 99 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.557-201ENST00000384680 107 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 RNU6-700P-201ENST00000391043 107 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.592-201ENST00000410274 109 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 AL356379.1-201ENST00000414105 126 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 RNU7-169P-201ENST00000459456 61 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 AC080013.2-201ENST00000460866 323 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 RN7SL274P-201ENST00000492268 272 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 RNU6-58P-201ENST00000517143 103 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 MIR4287-201ENST00000579398 78 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 MIR3923-201ENST00000579521 83 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 AC016925.2-201ENST00000605108 242 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 AC069294.1-201ENST00000608397 350 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.812-201ENST00000610788 101 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.784-201ENST00000613803 101 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.787-201ENST00000616522 101 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.780-201ENST00000617336 101 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.801-201ENST00000619005 101 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 AC091812.1-201ENST00000432235 1948 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 MTND5P16-201ENST00000460269 1703 ntBASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
UPF3AQ9H1J1 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.364-201ENST00000365532 101 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MIR10B-201ENST00000385011 110 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MIR95-201ENST00000385072 81 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MIR153-2-201ENST00000385225 87 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MIR208B-201ENST00000401172 77 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MIR1287-201ENST00000408492 90 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 AC007098.1-201ENST00000420122 367 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 AC112492.4-201ENST00000456549 352 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 AC007215.1-201ENST00000464893 276 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MIR5188-201ENST00000583467 113 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 AC125232.2-201ENST00000592457 143 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 AC078899.2-201ENST00000595282 212 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 AC104695.3-201ENST00000604052 296 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MIR502-201ENST00000606349 86 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 AL606534.2-204ENST00000635008 178 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.96□□□□□ -2.1
UPF3AQ9H1J1 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 RNU1-23P-201ENST00000363361 144 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 SNORA63C-201ENST00000364578 129 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 MIR676-201ENST00000390702 67 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 RNU6-159P-201ENST00000391080 106 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 RNU6-1093P-201ENST00000391194 107 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 RNU1-139P-201ENST00000391307 165 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 SUMO2P12-201ENST00000405924 140 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 EIF1P2-201ENST00000428233 350 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 RNA5SP233-201ENST00000459153 113 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 AC005840.1-201ENST00000498412 377 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.706-201ENST00000516933 99 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 CBX3P7-201ENST00000532876 502 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 DNAJC19P9-201ENST00000555084 351 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 MIR4680-201ENST00000580906 66 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 AC083806.3-201ENST00000614016 455 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 AL162373.1-201ENST00000620433 407 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 AC091932.3-201ENST00000624223 323 ntBASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.95□□□□□ -2.1
UPF3AQ9H1J1 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 RNY1P10-201ENST00000363268 113 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 SNORA63-201ENST00000363450 132 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.202-201ENST00000364083 110 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 SNORA16.1-201ENST00000364597 132 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 RNA5SP125-201ENST00000364843 120 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.319-201ENST00000365138 92 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 RNU6-318P-201ENST00000384283 103 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 MIR625-201ENST00000385047 85 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 SNORA69.1-201ENST00000390904 137 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 MRPL42P3-201ENST00000401492 326 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.597-201ENST00000410463 100 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 RNU2-48P-201ENST00000410694 191 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 AC113618.1-201ENST00000416747 285 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 AL590556.1-201ENST00000423231 483 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 RNU7-87P-201ENST00000459343 62 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 AC107032.1-201ENST00000485945 480 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 AC132942.1-201ENST00000486753 483 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 MIR449C-201ENST00000516047 92 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 RNU6-567P-201ENST00000516746 107 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 RNU7-4P-201ENST00000516961 62 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms