Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 C8orf59P2-201ENST00000603441 271 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.804-201ENST00000615262 101 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 SDR42E1P4-201ENST00000620894 481 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 MTND4LP32-201ENST00000636111 270 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 MTND5P16-201ENST00000460269 1703 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNU6-874P-201ENST00000362390 105 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNU6-545P-201ENST00000362681 104 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNU4-79P-201ENST00000362764 141 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 U3.8-201ENST00000363675 217 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNA5SP493-201ENST00000364115 91 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 SNORD114-6-201ENST00000364393 72 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNU5E-4P-201ENST00000364931 120 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.315-201ENST00000365117 102 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.338-201ENST00000365320 114 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 MIR625-201ENST00000385047 85 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 MIR559-201ENST00000385188 96 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNU2-20P-201ENST00000410425 191 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNA5SP504-201ENST00000410676 117 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNA5SP450-201ENST00000411206 102 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 AL353997.1-201ENST00000432936 108 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 AL353689.1-201ENST00000438895 199 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 AC099799.1-201ENST00000439809 192 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 SNRPEP8-201ENST00000442866 260 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RPL23AP3-201ENST00000453844 468 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RPL30P15-201ENST00000457129 321 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 AC010531.2-201ENST00000465012 153 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 AC022493.2-201ENST00000506122 481 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 RNU6-856P-201ENST00000516959 98 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 AC010999.1-201ENST00000611856 324 ntBASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.84□□□□□ -2.11
CCDC3Q9BQI4 AC073544.1-201ENST00000600110 1595 ntBASIC1.84□□□□□ -2.12
CCDC3Q9BQI4 ZNF702P-202ENST00000434269 1966 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 RNA5SP276-201ENST00000362580 94 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.179-201ENST00000363844 90 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.431-201ENST00000384086 102 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.557-201ENST00000384680 107 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 RNU6-1156P-201ENST00000410365 100 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.676-201ENST00000516393 96 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 RNU6-911P-201ENST00000516523 104 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 AC091144.1-201ENST00000519573 138 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 UBL5P4-201ENST00000562584 236 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 MIR4448-201ENST00000584360 86 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 AC005786.1-201ENST00000588553 154 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 AC005296.1-201ENST00000616145 209 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 U1.36-201ENST00000620684 176 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 AC130454.1-201ENST00000622948 401 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 AC091925.1-201ENST00000623204 462 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 AC091932.3-201ENST00000624223 323 ntBASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
CCDC3Q9BQI4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.67-201ENST00000362870 100 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 RNU6-99P-201ENST00000364721 107 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 RNU6-1145P-201ENST00000384246 107 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 MIR329-1-201ENST00000385028 80 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 BX510359.4-201ENST00000423750 193 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AC091179.3-201ENST00000474761 144 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.683-201ENST00000516508 93 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 RN7SKP49-201ENST00000516675 260 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AC144568.1-201ENST00000520139 137 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AC093027.1-201ENST00000546698 429 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 MIR4795-201ENST00000584182 89 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AL109918.3-201ENST00000603072 338 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AL353149.1-201ENST00000610667 244 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AC084781.2-201ENST00000615568 161 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 AC087588.2-201ENST00000617667 426 ntBASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
CCDC3Q9BQI4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 RNU6-23P-201ENST00000363283 107 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.146-201ENST00000363549 102 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.509-201ENST00000384506 99 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 MIR549A-201ENST00000385268 96 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AL512604.1-201ENST00000404812 257 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AC139712.2-201ENST00000424302 339 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AC092423.1-201ENST00000430165 186 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 MIR2053-201ENST00000459295 91 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AC074133.1-201ENST00000515696 183 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 SNORA25.15-201ENST00000516487 89 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AC125232.2-201ENST00000592457 143 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms