Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
ZNF560Q96MR9 RPL23AP36-201ENST00000413895 458 ntBASIC1.47□□□□□ -2.17
ZNF560Q96MR9 SNORA25.14-201ENST00000516481 132 ntBASIC1.47□□□□□ -2.17
ZNF560Q96MR9 RNU1-117P-201ENST00000517041 158 ntBASIC1.47□□□□□ -2.17
ZNF560Q96MR9 RNU6-1314P-201ENST00000517139 104 ntBASIC1.47□□□□□ -2.17
ZNF560Q96MR9 MIR3942-201ENST00000585264 109 ntBASIC1.47□□□□□ -2.17
ZNF560Q96MR9 AP003465.2-201ENST00000602571 373 ntBASIC1.47□□□□□ -2.17
ZNF560Q96MR9 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
ZNF560Q96MR9 MTND5P10-201ENST00000603719 1809 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 Y_RNA.3-201ENST00000362331 103 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 Y_RNA.157-201ENST00000363638 102 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 RNU5F-3P-201ENST00000363767 117 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 RNU6-1240P-201ENST00000365155 104 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 MIR194-1-201ENST00000384892 85 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 AC004965.1-201ENST00000413033 213 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 AC016909.1-201ENST00000415916 166 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 COX6CP10-201ENST00000416832 224 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.46□□□□□ -2.18
ZNF560Q96MR9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.46□□□□□ -2.18
ZNF560Q96MR9 RPS29P23-201ENST00000458635 123 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 MTCYBP18-201ENST00000501056 747 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.46□□□□□ -2.18
ZNF560Q96MR9 AL160236.1-201ENST00000556317 195 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.46□□□□□ -2.18
ZNF560Q96MR9 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.46□□□□□ -2.18
ZNF560Q96MR9 MIR8063-201ENST00000621930 81 ntBASIC1.46□□□□□ -2.18
ZNF560Q96MR9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.46□□□□□ -2.18
ZNF560Q96MR9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.45□□□□□ -2.18
ZNF560Q96MR9 SNORA33-201ENST00000363664 130 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 U3.8-201ENST00000363675 217 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 RNU6-280P-201ENST00000364145 104 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 Y_RNA.318-201ENST00000365131 97 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 RNU6-1013P-201ENST00000384180 107 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 RNU6-541P-201ENST00000384709 110 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 RNU6-159P-201ENST00000391080 106 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 AC243428.1-201ENST00000421099 264 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.45□□□□□ -2.18
ZNF560Q96MR9 MTATP6P13-201ENST00000438531 667 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 AC027119.1-201ENST00000440877 241 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 RPL30P10-201ENST00000488148 337 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.45□□□□□ -2.18
ZNF560Q96MR9 AC079140.2-201ENST00000506193 142 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 AC015688.6-201ENST00000577737 104 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 MTND5P35-201ENST00000557537 1720 ntBASIC1.45□□□□□ -2.18
ZNF560Q96MR9 AL391987.6-201ENST00000305671 199 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 RNU6-873P-201ENST00000363833 107 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 RNU4-12P-201ENST00000365233 139 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 SNORD116-4-201ENST00000384733 96 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 RNA5SP467-201ENST00000391274 118 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 MIR1185-2-201ENST00000408687 86 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.44□□□□□ -2.18
ZNF560Q96MR9 AC092473.1-201ENST00000441098 221 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 RNU1-123P-201ENST00000458950 160 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 FO393415.2-201ENST00000480085 343 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 RPS29P25-201ENST00000481709 171 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.44□□□□□ -2.18
ZNF560Q96MR9 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 MIR4709-201ENST00000577272 72 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 MIR4273-201ENST00000582824 84 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 PRR13P7-201ENST00000605538 430 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 AL157834.3-201ENST00000615543 103 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 AC009248.2-201ENST00000619826 254 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 MTND4P12-201ENST00000498999 1377 ntBASIC1.44□□□□□ -2.18
ZNF560Q96MR9 RNU4-40P-201ENST00000364351 143 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 Y_RNA.295-201ENST00000364918 102 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 Y_RNA.490-201ENST00000384413 102 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 RNU6-831P-201ENST00000384548 107 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 RNU6-955P-201ENST00000410497 104 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.43□□□□□ -2.18
ZNF560Q96MR9 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.43□□□□□ -2.18
ZNF560Q96MR9 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 MTND4LP16-201ENST00000440828 295 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.43□□□□□ -2.18
ZNF560Q96MR9 AC099513.1-201ENST00000490423 301 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 AL163195.1-201ENST00000496941 348 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 HMGN1P12-201ENST00000499125 195 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 RNU7-175P-201ENST00000515915 61 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 MIR4742-201ENST00000581069 85 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 AL359821.1-201ENST00000605519 182 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 AC093783.1-201ENST00000612976 329 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 AL121890.5-201ENST00000620848 304 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 AC100810.6-201ENST00000638068 285 ntBASIC1.43□□□□□ -2.18
ZNF560Q96MR9 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.42□□□□□ -2.18
ZNF560Q96MR9 SNORA4.2-201ENST00000365313 147 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 RNU6-950P-201ENST00000384651 107 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 MIR150-201ENST00000385048 84 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 RNA5SP323-201ENST00000391094 133 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 SDAD1P3-201ENST00000427380 333 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 AL589823.1-201ENST00000429577 183 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 RNU1-142P-201ENST00000516682 145 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 RNU6-566P-201ENST00000516790 107 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 RNU6-1088P-201ENST00000516850 104 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 RNA5SP454-201ENST00000517231 127 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 AC134698.4-201ENST00000523451 826 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.42□□□□□ -2.18
ZNF560Q96MR9 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.42□□□□□ -2.18
ZNF560Q96MR9 AP001485.1-201ENST00000604799 199 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 AL359075.3-201ENST00000613288 217 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.42□□□□□ -2.18
ZNF560Q96MR9 MIR7974-201ENST00000615835 79 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms